SCP2, chr1:53392901-53517375 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2906770 chr1:53471432 SCP2 All: C 108,990 15 C vs. A - - 1.13 (1.07-1.20) 40 (0-68) 5.39e-05
Meta_image?name=rs2906770

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs34163250 chr1:53549671 PODN C - 13 T vs. C 0.217 (T) 0.033 (T) >1 (-) 0 (-) >0.05
rs500442 chr1:53471524 SCP2 C - 13 T vs. C - - <1 (-) 4 (-) >0.05
rs1288392 chr1:53545744 PODN C - 13 A vs. G 0.058 (A) 0.183 (A) <1 (-) 23 (-) >0.05
rs7524881 chr1:53542077 PODN C - 13 T vs. C 0.225 (C) 0.242 (C) <1 (-) 0 (-) >0.05
rs11581058 chr1:53553522 SLC1A7 C - 13 A vs. G 0.217 (A) 0.033 (A) >1 (-) 0 (-) >0.05
rs946590 chr1:53543112 PODN C - 13 C vs. G 0.058 (C) 0.192 (C) <1 (-) 23 (-) >0.05
rs12070099 chr1:53549055 PODN C - 13 T vs. C 0.217 (C) 0.033 (C) <1 (-) 0 (-) >0.05
rs11579966 chr1:53551619 PODN [+445bp] C - 13 A vs. G 0.217 (A) 0.033 (A) >1 (-) 0 (-) >0.05
rs6588462 chr1:53551940 PODN [+766bp] C - 13 T vs. G 0.217 (T) 0.033 (T) >1 (-) 0 (-) >0.05
rs1295456 chr1:53560428 SLC1A7 C - 13 T vs. C 0.258 (C) 0.225 (C) <1 (-) 0 (-) >0.05
rs899972 chr1:53542793 PODN C - 13 T vs. G 0.058 (T) 0.158 (T) <1 (-) 23 (-) >0.05
rs11583585 chr1:53554406 SLC1A7 C - 13 T vs. C 0.217 (C) 0.033 (C) <1 (-) 0 (-) >0.05
rs12042673 chr1:53551880 PODN [+706bp] C - 13 T vs. C 0.058 (T) 0.225 (T) <1 (-) 26 (-) >0.05
rs1288405 chr1:53557612 SLC1A7 C - 13 A vs. C 0.225 (A) 0.05 (A) >1 (-) 0 (-) >0.05
rs899974 chr1:53550187 PODN C - 13 T vs. C 0.058 (C) 0.217 (C) >1 (-) 18 (-) >0.05
rs35213028 chr1:53563783 SLC1A7 C - 13 T vs. C 0.208 (T) 0.033 (T) >1 (-) 0 (-) >0.05
rs11206091 chr1:53559310 SLC1A7 C - 13 T vs. C 0.233 (T) 0.033 (T) >1 (-) 0 (-) >0.05
rs12725485 chr1:53564146 SLC1A7 C - 13 A vs. G 0.217 (G) 0.033 (G) <1 (-) 0 (-) >0.05
rs1300169 chr1:53560376 SLC1A7 C - 13 T vs. C 0.217 (C) 0.033 (C) <1 (-) 0 (-) >0.05
rs34127376 chr1:53562821 SLC1A7 C - 13 C vs. G 0.158 (C) 0.033 (C) >1 (-) 0 (-) >0.05
rs12140504 chr1:53558521 SLC1A7 C - 13 T vs. C 0.058 (T) 0.225 (T) <1 (-) 15 (-) >0.05
rs1288403 chr1:53555783 SLC1A7 C - 13 A vs. C 0.117 (A) 0.317 (C) <1 (-) 0 (-) >0.05
rs12145611 chr1:53538669 PODN C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs10816336 chr1:53472988 SCP2 C - 13 T vs. C - - <1 (-) 26 (-) >0.05
rs12027834 chr1:53450204 SCP2 C - 9 T vs. C - 0.208 (T) <1 (-) 43 (-) >0.05
rs139857434 chr1:53520981 SCP2 [+3606bp] C - 11 A vs. G - - <1 (-) 0 (-) >0.05
rs11206043 chr1:53402552 SCP2 C - 12 T vs. C 0.3 (C) 0.267 (T) <1 (-) 1 (-) >0.05
rs13391629 chr1:53471510 SCP2 C - 13 C vs. G - - <1 (-) 34 (-) >0.05
rs13391502 chr1:53471399 SCP2 C - 13 A vs. G - - <1 (-) 34 (-) >0.05
rs74529778 chr1:53503274 SCP2 C - 10 T vs. G - 0.067 (G) >1 (-) 40 (-) >0.05
rs1288406 chr1:53558270 SLC1A7 C - 12 A vs. G 0.217 (A) 0.05 (A) >1 (-) 0 (-) >0.05
rs1288389 chr1:53544597 PODN C - 13 T vs. C 0.092 (T) 0.292 (C) <1 (-) 0 (-) >0.05
rs116221956 chr1:53513007 SCP2 C - 11 A vs. G 0.025 (G) - >1 (-) 28 (-) >0.05
rs79560803 chr1:53564492 SLC1A7 C - 10 T vs. C 0.033 (T) - >1 (-) 43 (-) >0.05
rs1242331 chr1:53392908 SCP2 C - 13 A vs. G 0.292 (A) - >1 (-) 0 (-) >0.05
rs150403579 chr1:53426709 SCP2 C - 5 C vs. G - - >1 (-) 0 (-) >0.05
rs1769316 chr1:53537266 PODN C - 11 A vs. G 0.375 (A) 0.283 (G) <1 (-) 0 (-) >0.05
rs12747412 chr1:53503282 SCP2 C - 12 T vs. C 0.483 (T) - >1 (-) 0 (-) >0.05
rs1288386 chr1:53535478 PODN C - 12 A vs. G 0.358 (A) 0.383 (G) <1 (-) 5 (-) >0.05
rs12405280 chr1:53423528 SCP2 C - 13 T vs. G - - <1 (-) 0 (-) >0.05
rs10888760 chr1:53471482 SCP2 C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs56222568 chr1:53432786 SCP2 C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs10242881 chr1:53471481 SCP2 C - 12 A vs. G - - >1 (-) 20 (-) >0.05
rs7548389 chr1:53404211 SCP2 C - 13 T vs. C 0.35 (C) 0.042 (T) <1 (-) 0 (-) >0.05
rs1775540 chr1:53407893 SCP2 C - 13 A vs. C 0.3 (C) 0.267 (A) <1 (-) 0 (-) >0.05
rs485128 chr1:53344583 ZYG11A C - 13 T vs. C 0.317 (T) 0.042 (C) >1 (-) 0 (-) >0.05
rs897732 chr1:53382816 ECHDC2 C - 13 A vs. C 0.317 (A) 0.233 (C) >1 (-) 0 (-) >0.05
rs12132507 chr1:53482013 SCP2 C - 12 A vs. G 0.467 (G) - <1 (-) 0 (-) >0.05
rs1242201 chr1:53344748 ZYG11A C - 13 A vs. G 0.325 (G) 0.042 (A) <1 (-) 0 (-) >0.05
rs17107576 chr1:53482526 SCP2 C - 10 T vs. C - 0.3 (C) >1 (-) 43 (-) >0.05

Association studies for this region [+]