SCP2, chr1:53392901-53517375 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2906770 chr1:53471432 SCP2 All: C 108,990 15 C vs. A - - 1.13 (1.07-1.20) 40 (0-68) 5.39e-05
Meta_image?name=rs2906770

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs141267023 chr1:53541458 PODN C - 9 A vs. G - - <1 (-) 55 (-) >0.05
rs12973749 chr1:53471068 SCP2 C - 13 C vs. G - - <1 (-) 26 (-) >0.05
rs6682024 chr1:53439525 SCP2 C - 13 T vs. C 0.35 (C) - <1 (-) 0 (-) >0.05
rs147716612 chr1:53385262 ECHDC2 C - 8 A vs. G - - <1 (-) 0 (-) >0.05
rs79114675 chr1:53374130 ECHDC2 C - 8 A vs. G - - >1 (-) 0 (-) >0.05
rs74807762 chr1:53560171 SLC1A7 C - 13 A vs. G - 0.233 (A) <1 (-) 0 (-) >0.05
rs75746484 chr1:53410464 SCP2 C - 11 T vs. C - - >1 (-) 0 (-) >0.05
rs112180688 chr1:53349896 ZYG11A C - 13 T vs. C - - <1 (-) 7 (-) >0.05
rs55836843 chr1:53387215 ECHDC2 C - 13 A vs. G 0.025 (A) - <1 (-) 0 (-) >0.05
rs12326762 chr1:53471547 SCP2 C - 13 T vs. G - - >1 (-) 0 (-) >0.05
rs56240702 chr1:53386980 ECHDC2 C - 13 T vs. G 0.025 (T) - <1 (-) 0 (-) >0.05
rs12089128 chr1:53557644 SLC1A7 C - 13 T vs. C - 0.233 (T) <1 (-) 0 (-) >0.05
rs1077467 chr1:53542533 PODN C - 11 T vs. G - 0.217 (T) >1 (-) 0 (-) >0.05
rs12149729 chr1:53471037 SCP2 C - 13 T vs. G - - >1 (-) 13 (-) >0.05
rs75990890 chr1:53557352 SLC1A7 C - 13 C vs. G - 0.242 (C) <1 (-) 0 (-) >0.05
rs2124860 chr1:53355678 ZYG11A C - 11 T vs. C - 0.25 (T) <1 (-) 54 (-) >0.05
rs2306461 chr1:53556532 SLC1A7 C - 13 A vs. G - 0.225 (A) <1 (-) 0 (-) >0.05
rs13373842 chr1:53351884 ZYG11A C - 10 A vs. G - - >1 (-) 0 (-) >0.05
rs1044365 chr1:53361928 ECHDC2 C - 13 A vs. G 0.025 (G) 0.042 (G) >1 (-) 0 (-) >0.05
rs10015646 chr1:53471033 SCP2 C - 13 C vs. G - - <1 (-) 38 (-) >0.05
rs11584332 chr1:53351855 ZYG11A C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs11206037 chr1:53351078 ZYG11A C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs141256875 chr1:53469831 SCP2 C - 9 C vs. G - - >1 (-) 0 (-) >0.05
rs138176438 chr1:53484241 SCP2 C - 4 A vs. C - - >1 (-) 0 (-) >0.05
rs58600784 chr1:53554736 SLC1A7 C - 13 T vs. C - 0.225 (T) <1 (-) 0 (-) >0.05
rs10125820 chr1:53471501 SCP2 C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs41294752 chr1:53551064 PODN C - 8 T vs. C - - >1 (-) 0 (-) >0.05
rs74081283 chr1:53386714 ECHDC2 C - 13 A vs. G 0.025 (G) 0.042 (G) >1 (-) 0 (-) >0.05
rs111239006 chr1:53384777 ECHDC2 C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs12567474 chr1:53447411 SCP2 C - 12 T vs. C 0.433 (C) 0.475 (C) <1 (-) 0 (-) >0.05
rs149865058 chr1:53499535 SCP2 C - 9 A vs. G - - <1 (-) 4 (-) >0.05
rs1288391 chr1:53545479 PODN C - 13 A vs. C 0.308 (C) 0.267 (A) <1 (-) 0 (-) >0.05
rs12749112 chr1:53436563 SCP2 C - 4 T vs. C 0.058 (C) - <1 (-) 28 (-) >0.05
rs140204240 chr1:53476747 SCP2 C - 4 T vs. C - - <1 (-) 0 (-) >0.05
rs57497665 chr1:53470982 SCP2 C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs10002284 chr1:53471530 SCP2 C - 13 A vs. G - - >1 (-) 3 (-) >0.05
rs1047741 chr1:53553069 SLC1A7 C - 13 A vs. G - 0.233 (A) <1 (-) 0 (-) >0.05
rs114400554 chr1:53477900 SCP2 C - 4 T vs. C - - >1 (-) 0 (-) >0.05
rs141420838 chr1:53457832 SCP2 C - 4 A vs. C - - <1 (-) 0 (-) >0.05
rs116288613 chr1:53477680 SCP2 C - 4 T vs. C - - >1 (-) 0 (-) >0.05
rs13250749 chr1:53471237 SCP2 C - 13 T vs. C - - >1 (-) 31 (-) >0.05
rs7552650 chr1:53448152 SCP2 C - 10 A vs. G - - <1 (-) 0 (-) >0.05
rs12095038 chr1:53561879 SLC1A7 C - 9 T vs. C 0.033 (T) - >1 (-) 0 (-) >0.05
rs141877812 chr1:53435441 SCP2 C - 11 T vs. C - - >1 (-) 2 (-) >0.05
rs4130006 chr1:53488917 SCP2 C - 13 T vs. C 0.067 (T) 0.367 (T) >1 (-) 0 (-) >0.05
rs4378148 chr1:53488916 SCP2 C - 13 A vs. G 0.067 (G) 0.367 (G) <1 (-) 0 (-) >0.05
rs2880434 chr1:53471106 SCP2 C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs10004631 chr1:53471382 SCP2 C - 13 T vs. C - - >1 (-) 3 (-) >0.05
rs12031119 chr1:53356277 ZYG11A C - 11 T vs. C - 0.258 (C) >1 (-) 52 (-) >0.05
rs72903117 chr1:53490682 SCP2 C - 13 A vs. G 0.067 (A) 0.367 (A) >1 (-) 0 (-) >0.05

Association studies for this region [+]