SCP2, chr1:53392901-53517375 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2906770 chr1:53471432 SCP2 All: C 108,990 15 C vs. A - - 1.13 (1.07-1.20) 40 (0-68) 5.39e-05
Meta_image?name=rs2906770

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6698146 chr1:53492917 SCP2 C - 13 A vs. G 0.05 (A) 0.358 (A) >1 (-) 0 (-) >0.05
rs11587812 chr1:53393511 SCP2 C - 13 A vs. G 0.025 (A) 0.025 (A) <1 (-) 0 (-) >0.05
rs72670860 chr1:53563266 SLC1A7 C - 12 C vs. G 0.125 (G) - >1 (-) 4 (-) >0.05
rs1288402 chr1:53555071 SLC1A7 C - 13 A vs. G 0.308 (G) 0.3 (A) <1 (-) 0 (-) >0.05
rs148782537 chr1:53440012 SCP2 C - 5 A vs. G - - <1 (-) 0 (-) >0.05
rs146556974 chr1:53499226 SCP2 C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs6687909 chr1:53547800 PODN C - 12 A vs. G - 0.233 (G) >1 (-) 24 (-) >0.05
rs12568454 chr1:53442622 SCP2 C - 11 A vs. G - 0.1 (G) >1 (-) 1 (-) >0.05
rs10759377 chr1:53473039 SCP2 C - 12 A vs. T - - >1 (-) 0 (-) >0.05
rs2298145 chr1:53365104 ECHDC2 C - 13 A vs. G 0.017 (G) 0.042 (G) >1 (-) 0 (-) >0.05
rs72903173 chr1:53500694 SCP2 C - 13 A vs. G - - <1 (-) 24 (-) >0.05
rs12562238 chr1:53470826 SCP2 C - 13 C vs. G - - >1 (-) 0 (-) >0.05
rs10157941 chr1:53548986 PODN C - 13 C vs. G 0.275 (G) 0.217 (G) <1 (-) 4 (-) >0.05
rs142654963 chr1:53471242 SCP2 C - 9 T vs. G - - <1 (-) 0 (-) >0.05
rs113295504 chr1:53470947 SCP2 C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs4926583 chr1:53470066 SCP2 C - 6 A vs. C - - <1 (-) 0 (-) >0.05
rs1288408 chr1:53558792 SLC1A7 C - 13 A vs. G 0.275 (G) 0.25 (G) <1 (-) 4 (-) >0.05
rs1288388 chr1:53544439 PODN C - 13 A vs. G 0.3 (G) 0.3 (A) <1 (-) 0 (-) >0.05
rs77433702 chr1:53566167 SLC1A7 C - 13 T vs. C 0.017 (T) 0.208 (T) >1 (-) 0 (-) >0.05
rs115644625 chr1:53566032 SLC1A7 C - 13 T vs. C 0.033 (C) - <1 (-) 0 (-) >0.05
rs17107896 chr1:53552265 SLC1A7 [-590bp] C - 13 A vs. G - 0.233 (G) >1 (-) 0 (-) >0.05
rs113560470 chr1:53408496 SCP2 C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs10282748 chr1:53471276 SCP2 C - 13 A vs. C - - <1 (-) 24 (-) >0.05
rs17107817 chr1:53534357 PODN C - 13 T vs. C 0.033 (C) 0.25 (C) <1 (-) 0 (-) >0.05
rs1288393 chr1:53545763 PODN C - 13 A vs. G 0.317 (G) 0.292 (A) <1 (-) 0 (-) >0.05
rs6686963 chr1:53486512 SCP2 C - 13 T vs. C 0.067 (C) 0.367 (C) <1 (-) 0 (-) >0.05
rs4431784 chr1:53520889 SCP2 [+3514bp] C - 13 T vs. G - - <1 (-) 0 (-) >0.05
rs1288404 chr1:53557484 SLC1A7 C - 13 T vs. C 0.275 (T) 0.275 (T) >1 (-) 8 (-) >0.05
rs72903176 chr1:53501202 SCP2 C - 13 C vs. G 0.033 (G) 0.067 (G) <1 (-) 28 (-) >0.05
rs114641070 chr1:53432282 SCP2 C - 13 T vs. G - - <1 (-) 0 (-) >0.05
rs116167803 chr1:53432280 SCP2 C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs899973 chr1:53548295 PODN C - 13 C vs. G 0.3 (C) 0.3 (G) >1 (-) 0 (-) >0.05
rs55898414 chr1:53562089 SLC1A7 C - 9 T vs. C 0.025 (T) - >1 (-) 0 (-) >0.05
rs138735805 chr1:53361116 ZYG11A [+446bp] C - 9 T vs. C - - >1 (-) 0 (-) >0.05
rs28384398 chr1:53392597 ECHDC2 C - 13 T vs. G 0.025 (T) 0.208 (T) >1 (-) 0 (-) >0.05
rs17107627 chr1:53489717 SCP2 C - 13 A vs. G 0.067 (G) 0.367 (G) <1 (-) 0 (-) >0.05
rs1288399 chr1:53553485 SLC1A7 C - 13 A vs. G 0.275 (A) 0.258 (A) >1 (-) 8 (-) >0.05
rs113227930 chr1:53479032 SCP2 C - 13 A vs. C - - >1 (-) 0 (-) >0.05
rs115271015 chr1:53465386 SCP2 C - 4 T vs. C - - >1 (-) 0 (-) >0.05
rs6674545 chr1:53492867 SCP2 C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs72899307 chr1:53428980 SCP2 C - 13 T vs. C 0.025 (C) 0.225 (C) <1 (-) 0 (-) >0.05
rs34265538 chr1:53470791 SCP2 C - 5 T vs. C - - <1 (-) 13 (-) >0.05
rs1288401 chr1:53553754 SLC1A7 C - 13 T vs. C 0.317 (T) 0.3 (C) >1 (-) 0 (-) >0.05
rs7536048 chr1:53489601 SCP2 C - 13 T vs. C 0.067 (T) 0.367 (T) >1 (-) 0 (-) >0.05
rs72903125 chr1:53491334 SCP2 C - 13 T vs. C 0.067 (T) 0.367 (T) >1 (-) 0 (-) >0.05
rs72903174 chr1:53501159 SCP2 C - 13 A vs. G 0.033 (G) 0.092 (G) <1 (-) 26 (-) >0.05
rs17107640 chr1:53493625 SCP2 C - 13 A vs. G 0.067 (G) 0.367 (G) <1 (-) 0 (-) >0.05
rs17107831 chr1:53535499 PODN C - 13 T vs. C 0.05 (T) 0.033 (T) <1 (-) 0 (-) >0.05
rs55713135 chr1:53499225 SCP2 C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs145902346 chr1:53381267 ECHDC2 C - 10 A vs. G - - <1 (-) 0 (-) >0.05

Association studies for this region [+]