SCP2, chr1:53392901-53517375 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2906770 chr1:53471432 SCP2 All: C 108,990 15 C vs. A - - 1.13 (1.07-1.20) 40 (0-68) 5.39e-05
Meta_image?name=rs2906770

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs113889351 chr1:53443363 SCP2 C - 7 T vs. C - - <1 (-) 28 (-) >0.05
rs11943514 chr1:53471444 SCP2 C - 13 A vs. G - - >1 (-) 11 (-) >0.05
rs1288397 chr1:53551293 PODN [+119bp] C - 12 A vs. G 0.317 (G) 0.125 (G) >1 (-) 0 (-) >0.05
rs72903124 chr1:53491292 SCP2 C - 13 A vs. C 0.067 (A) 0.367 (A) >1 (-) 0 (-) >0.05
rs7519017 chr1:53510925 SCP2 C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs998296 chr1:53523963 PODN [-3891bp] C - 13 A vs. G 0.017 (A) 0.075 (A) >1 (-) 0 (-) >0.05
rs1871749 chr1:53502569 SCP2 C - 13 T vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs11206048 chr1:53412467 SCP2 C - 13 A vs. G 0.025 (G) 0.2 (G) <1 (-) 2 (-) >0.05
rs78751306 chr1:53559846 SLC1A7 C - 13 A vs. G 0.033 (A) 0.175 (A) >1 (-) 0 (-) >0.05
rs74082418 chr1:53536111 PODN C - 4 T vs. C - - >1 (-) 0 (-) >0.05
rs4926940 chr1:53457942 SCP2 C - 13 A vs. G 0.083 (A) - >1 (-) 0 (-) >0.05
rs140581937 chr1:53371735 ECHDC2 C - 9 C vs. G - - <1 (-) 0 (-) >0.05
rs80064840 chr1:53344073 ZYG11A C - 13 A vs. G 0.025 (G) 0.217 (G) <1 (-) 0 (-) >0.05
rs6685819 chr1:53425720 SCP2 C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs75166253 chr1:53540071 PODN C - 13 T vs. G - 0.208 (G) >1 (-) 5 (-) >0.05
rs17107560 chr1:53481477 SCP2 C - 13 A vs. G 0.067 (A) 0.367 (A) >1 (-) 0 (-) >0.05
rs458521 chr1:53471403 SCP2 C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs1077466 chr1:53542620 PODN C - 13 A vs. G - 0.208 (A) <1 (-) 0 (-) >0.05
rs13375034 chr1:53424307 SCP2 C - 13 T vs. C 0.025 (C) 0.208 (C) <1 (-) 0 (-) >0.05
rs139855188 chr1:53451688 SCP2 C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs12044957 chr1:53425155 SCP2 C - 10 T vs. C - 0.258 (T) <1 (-) 45 (-) >0.05
rs6679819 chr1:53476970 SCP2 C - 13 A vs. G 0.092 (A) 0.4 (A) >1 (-) 2 (-) >0.05
rs57093639 chr1:53490369 SCP2 C - 13 A vs. G 0.075 (A) 0.367 (A) >1 (-) 0 (-) >0.05
rs11588325 chr1:53557944 SLC1A7 C - 13 T vs. C 0.033 (T) - <1 (-) 0 (-) >0.05
rs117828082 chr1:53349590 ZYG11A C - 13 A vs. C - 0.225 (A) >1 (-) 0 (-) >0.05
rs1288398 chr1:53552319 SLC1A7 [-536bp] C - 13 T vs. C 0.342 (C) 0.3 (T) <1 (-) 0 (-) >0.05
rs6694494 chr1:53528264 PODN C - 9 A vs. C - 0.083 (A) >1 (-) 0 (-) >0.05
rs13496 chr1:53516742 SCP2 C - 13 A vs. G 0.067 (A) 0.375 (A) >1 (-) 0 (-) >0.05
rs4130007 chr1:53489087 SCP2 C - 13 C vs. G 0.067 (G) 0.367 (G) <1 (-) 0 (-) >0.05
rs17107683 chr1:53501409 SCP2 C - 13 A vs. G 0.033 (A) 0.042 (A) >1 (-) 18 (-) >0.05
rs74419704 chr1:53501402 SCP2 C - 13 A vs. G 0.033 (G) - <1 (-) 18 (-) >0.05
rs7546714 chr1:53488564 SCP2 C - 13 A vs. T 0.092 (A) 0.4 (A) >1 (-) 5 (-) >0.05
rs58140496 chr1:53479298 SCP2 C - 13 A vs. G 0.025 (A) 0.358 (A) >1 (-) 0 (-) >0.05
rs2084303 chr1:53470917 SCP2 C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs115033062 chr1:53430632 SCP2 C - 13 A vs. G 0.025 (A) 0.192 (A) >1 (-) 0 (-) >0.05
rs75287494 chr1:53350422 ZYG11A C - 13 T vs. G - 0.225 (T) >1 (-) 0 (-) >0.05
rs965097 chr1:53525266 PODN [-2588bp] C - 13 A vs. C 0.067 (C) 0.367 (C) <1 (-) 0 (-) >0.05
rs112325050 chr1:53373365 ECHDC2 C - 9 T vs. C - - >1 (-) 0 (-) >0.05
rs12952868 chr1:53471060 SCP2 C - 13 T vs. G - - <1 (-) 27 (-) >0.05
rs145619348 chr1:53374073 ECHDC2 C - 9 A vs. G - - >1 (-) 0 (-) >0.05
rs6688270 chr1:53446879 SCP2 C - 13 T vs. C 0.025 (C) 0.183 (C) <1 (-) 0 (-) >0.05
rs17107710 chr1:53502973 SCP2 C - 13 T vs. G 0.067 (G) 0.367 (G) <1 (-) 0 (-) >0.05
rs60885959 chr1:53519530 SCP2 [+2155bp] C - 13 A vs. G 0.025 (A) 0.067 (A) >1 (-) 0 (-) >0.05
rs7544876 chr1:53485391 SCP2 C - 13 A vs. G 0.067 (A) 0.367 (A) >1 (-) 0 (-) >0.05
rs60961888 chr1:53557976 SLC1A7 C - 13 T vs. C 0.033 (T) 0.192 (T) >1 (-) 0 (-) >0.05
rs80232635 chr1:53502301 SCP2 C - 13 A vs. G 0.033 (G) - <1 (-) 0 (-) >0.05
rs7526661 chr1:53486885 SCP2 C - 13 T vs. C 0.067 (T) - >1 (-) 0 (-) >0.05
rs72901391 chr1:53486613 SCP2 C - 13 A vs. G 0.067 (A) 0.375 (A) >1 (-) 0 (-) >0.05
rs74084148 chr1:53556625 SLC1A7 C - 13 T vs. C - 0.033 (T) <1 (-) 0 (-) >0.05
rs150779185 chr1:53495634 SCP2 C - 13 T vs. C - - <1 (-) 0 (-) >0.05

Association studies for this region [+]