SCP2, chr1:53392901-53517375 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2906770 chr1:53471432 SCP2 All: C 108,990 15 C vs. A - - 1.13 (1.07-1.20) 40 (0-68) 5.39e-05
Meta_image?name=rs2906770

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs17107666 chr1:53496675 SCP2 C - 13 A vs. C 0.067 (C) 0.367 (C) <1 (-) 0 (-) >0.05
rs142151341 chr1:53495624 SCP2 C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs7540852 chr1:53487047 SCP2 C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs6673572 chr1:53499893 SCP2 C - 13 A vs. G 0.067 (A) 0.367 (A) >1 (-) 0 (-) >0.05
rs6698224 chr1:53492965 SCP2 C - 13 A vs. G 0.067 (A) 0.367 (A) >1 (-) 0 (-) >0.05
rs7543151 chr1:53510038 SCP2 C - 13 A vs. G - 0.092 (A) >1 (-) 18 (-) >0.05
rs6588451 chr1:53492366 SCP2 C - 13 T vs. C 0.067 (T) 0.367 (T) >1 (-) 0 (-) >0.05
rs41294530 chr1:53442376 SCP2 C - 13 A vs. G 0.025 (G) 0.225 (G) <1 (-) 0 (-) >0.05
rs6675908 chr1:53488202 SCP2 C - 13 T vs. C 0.067 (T) 0.367 (T) >1 (-) 0 (-) >0.05
rs72899330 chr1:53441903 SCP2 C - 13 A vs. G 0.025 (G) 0.208 (G) <1 (-) 0 (-) >0.05
rs72903121 chr1:53490989 SCP2 C - 13 A vs. G 0.067 (G) 0.367 (G) <1 (-) 0 (-) >0.05
rs72903122 chr1:53491013 SCP2 C - 13 C vs. G 0.067 (C) 0.367 (C) >1 (-) 0 (-) >0.05
rs72903123 chr1:53491183 SCP2 C - 13 T vs. C 0.067 (T) 0.367 (T) >1 (-) 0 (-) >0.05
rs17107630 chr1:53489759 SCP2 C - 13 A vs. T 0.067 (A) 0.367 (A) >1 (-) 0 (-) >0.05
rs60411922 chr1:53489815 SCP2 C - 13 A vs. G 0.067 (A) 0.367 (A) >1 (-) 0 (-) >0.05
rs72903118 chr1:53490705 SCP2 C - 13 A vs. G 0.067 (A) 0.358 (A) >1 (-) 0 (-) >0.05
rs17107639 chr1:53493540 SCP2 C - 13 T vs. C 0.067 (C) 0.367 (C) <1 (-) 0 (-) >0.05
rs17107643 chr1:53493822 SCP2 C - 13 T vs. G 0.067 (T) 0.367 (T) >1 (-) 0 (-) >0.05
rs6588450 chr1:53488402 SCP2 C - 13 C vs. G 0.067 (C) 0.367 (C) >1 (-) 0 (-) >0.05
rs6678556 chr1:53488291 SCP2 C - 13 T vs. C 0.067 (T) 0.367 (T) >1 (-) 0 (-) >0.05
rs72903120 chr1:53490763 SCP2 C - 13 T vs. C 0.067 (T) 0.367 (T) >1 (-) 0 (-) >0.05
rs7535959 chr1:53489534 SCP2 C - 13 T vs. C 0.067 (T) 0.367 (T) >1 (-) 0 (-) >0.05
rs17107624 chr1:53489668 SCP2 C - 13 T vs. C 0.067 (T) 0.367 (T) >1 (-) 0 (-) >0.05
rs72903134 chr1:53493072 SCP2 C - 13 C vs. G 0.067 (C) 0.367 (C) >1 (-) 0 (-) >0.05
rs72903137 chr1:53493246 SCP2 C - 13 T vs. G - - >1 (-) 0 (-) >0.05
rs74615171 chr1:53439126 SCP2 C - 13 A vs. G 0.017 (G) 0.192 (G) <1 (-) 0 (-) >0.05
rs79969290 chr1:53493426 SCP2 C - 13 C vs. G 0.067 (G) 0.367 (G) <1 (-) 0 (-) >0.05
rs112024481 chr1:53493267 SCP2 C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs80162538 chr1:53490887 SCP2 C - 13 C vs. G 0.033 (C) 0.267 (C) >1 (-) 0 (-) >0.05
rs17107633 chr1:53490221 SCP2 C - 13 T vs. C 0.067 (C) 0.35 (C) <1 (-) 0 (-) >0.05
rs57871697 chr1:53490399 SCP2 C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs72903115 chr1:53490614 SCP2 C - 13 T vs. C 0.067 (C) 0.367 (C) <1 (-) 0 (-) >0.05
rs77514340 chr1:53490345 SCP2 C - 13 T vs. C 0.067 (T) 0.35 (T) >1 (-) 0 (-) >0.05
rs17107662 chr1:53495529 SCP2 C - 13 T vs. G 0.067 (G) 0.367 (G) <1 (-) 0 (-) >0.05
rs58283791 chr1:53489983 SCP2 C - 13 A vs. G 0.067 (A) 0.367 (A) >1 (-) 0 (-) >0.05
rs58651631 chr1:53489949 SCP2 C - 13 A vs. C 0.067 (C) 0.367 (C) <1 (-) 0 (-) >0.05
rs138379013 chr1:53436686 SCP2 C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs17107656 chr1:53494927 SCP2 C - 13 C vs. G 0.067 (C) 0.367 (C) >1 (-) 0 (-) >0.05
rs60492542 chr1:53494599 SCP2 C - 13 A vs. C - - >1 (-) 0 (-) >0.05
rs34189188 chr1:53439926 SCP2 C - 13 T vs. C 0.025 (T) 0.217 (T) >1 (-) 0 (-) >0.05
rs75634378 chr1:53438158 SCP2 C - 13 A vs. C 0.025 (A) 0.217 (A) >1 (-) 0 (-) >0.05
rs35121754 chr1:53439942 SCP2 C - 13 C vs. G 0.025 (G) 0.2 (G) <1 (-) 0 (-) >0.05
rs11581638 chr1:53459690 SCP2 C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs17107617 chr1:53489498 SCP2 C - 13 C vs. G 0.033 (G) 0.283 (G) <1 (-) 0 (-) >0.05
rs79566296 chr1:53478189 SCP2 C - 13 C vs. G 0.033 (C) 0.267 (C) >1 (-) 0 (-) >0.05
rs76900154 chr1:53489320 SCP2 C - 13 T vs. C 0.033 (T) 0.283 (T) >1 (-) 0 (-) >0.05
rs12094460 chr1:53506855 SCP2 C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs17107864 chr1:53544807 PODN C - 13 T vs. C 0.033 (T) 0.233 (T) >1 (-) 0 (-) >0.05
rs79128921 chr1:53477323 SCP2 C - 13 T vs. C 0.033 (C) 0.283 (C) <1 (-) 0 (-) >0.05
rs17107572 chr1:53482078 SCP2 C - 13 A vs. G - 0.267 (A) >1 (-) 0 (-) >0.05

Association studies for this region [+]