SCP2, chr1:53392901-53517375 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2906770 chr1:53471432 SCP2 All: C 108,990 15 C vs. A - - 1.13 (1.07-1.20) 40 (0-68) 5.39e-05
Meta_image?name=rs2906770

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs111589810 chr1:53359266 ZYG11A C - 13 A vs. G 0.025 (A) 0.175 (A) >1 (-) 0 (-) >0.05
rs28476576 chr1:53505596 SCP2 C - 13 A vs. G 0.092 (G) 0.4 (G) <1 (-) 0 (-) >0.05
rs80145801 chr1:53485330 SCP2 C - 13 T vs. C 0.017 (T) 0.283 (T) >1 (-) 0 (-) >0.05
rs147461964 chr1:53349739 ZYG11A C - 4 A vs. G - - >1 (-) 47 (-) >0.05
rs7529265 chr1:53480745 SCP2 C - 13 A vs. G 0.067 (A) 0.367 (A) >1 (-) 0 (-) >0.05
rs7555162 chr1:53489244 SCP2 C - 13 A vs. G 0.067 (A) 0.367 (A) >1 (-) 0 (-) >0.05
rs7549603 chr1:53489296 SCP2 C - 13 T vs. G 0.067 (G) 0.367 (G) <1 (-) 0 (-) >0.05
rs6684285 chr1:53486262 SCP2 C - 13 T vs. C 0.067 (C) 0.383 (C) <1 (-) 0 (-) >0.05
rs113493366 chr1:53476182 SCP2 C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs61314084 chr1:53499512 SCP2 C - 13 T vs. C 0.092 (C) 0.383 (C) <1 (-) 0 (-) >0.05
rs61355531 chr1:53505072 SCP2 C - 13 A vs. T 0.025 (T) 0.267 (T) <1 (-) 0 (-) >0.05
rs4638058 chr1:53497686 SCP2 C - 13 T vs. C 0.092 (C) 0.4 (C) <1 (-) 0 (-) >0.05
rs10437066 chr1:53495130 SCP2 C - 13 A vs. G 0.092 (A) 0.4 (A) >1 (-) 0 (-) >0.05
rs75470315 chr1:53487808 SCP2 C - 13 T vs. C 0.025 (T) 0.283 (T) >1 (-) 0 (-) >0.05
rs6684182 chr1:53486314 SCP2 C - 13 A vs. G 0.067 (G) 0.375 (G) <1 (-) 0 (-) >0.05
rs80069702 chr1:53513022 SCP2 C - 13 A vs. G 0.017 (A) - >1 (-) 0 (-) >0.05
rs111857585 chr1:53470508 SCP2 C - 13 T vs. C - - >1 (-) 24 (-) >0.05
rs17107690 chr1:53501451 SCP2 C - 13 A vs. C 0.033 (C) 0.067 (C) <1 (-) 17 (-) >0.05
rs17107697 chr1:53501472 SCP2 C - 13 A vs. G 0.033 (A) 0.083 (A) >1 (-) 17 (-) >0.05
rs77509776 chr1:53488641 SCP2 C - 13 A vs. C 0.033 (C) 0.283 (C) <1 (-) 0 (-) >0.05
rs17107720 chr1:53506670 SCP2 C - 13 A vs. C 0.033 (C) 0.283 (C) <1 (-) 0 (-) >0.05
rs58523403 chr1:53434133 SCP2 C - 13 T vs. C 0.025 (T) 0.225 (T) >1 (-) 0 (-) >0.05
rs2298146 chr1:53371919 ECHDC2 C - 13 A vs. G 0.025 (A) 0.183 (A) >1 (-) 0 (-) >0.05
rs76990261 chr1:53556695 SLC1A7 C - 13 A vs. C 0.033 (C) - <1 (-) 0 (-) >0.05
rs78339936 chr1:53345981 ZYG11A C - 4 T vs. C 0.017 (T) 0.083 (T) <1 (-) 61 (-) >0.05
rs4244640 chr1:53494441 SCP2 C - 13 A vs. G 0.092 (G) 0.4 (G) <1 (-) 0 (-) >0.05
rs17131749 chr1:53461473 SCP2 C - 13 A vs. G 0.067 (G) 0.367 (G) <1 (-) 0 (-) >0.05
rs56943571 chr1:53505568 SCP2 C - 13 A vs. G 0.033 (A) 0.283 (A) >1 (-) 0 (-) >0.05
rs12075895 chr1:53497421 SCP2 C - 13 A vs. G 0.033 (A) 0.3 (A) >1 (-) 0 (-) >0.05
rs17107654 chr1:53494879 SCP2 C - 13 C vs. G 0.067 (G) 0.367 (G) <1 (-) 0 (-) >0.05
rs150311619 chr1:53496507 SCP2 C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs6684171 chr1:53486094 SCP2 C - 13 T vs. C 0.092 (C) 0.4 (C) <1 (-) 0 (-) >0.05
rs115864035 chr1:53444339 SCP2 C - 7 A vs. G 0.017 (G) - >1 (-) 2 (-) >0.05
rs74344194 chr1:53500244 SCP2 C - 13 A vs. G 0.033 (G) 0.292 (G) <1 (-) 0 (-) >0.05
rs59798079 chr1:53519508 SCP2 [+2133bp] C - 13 T vs. C 0.058 (T) 0.108 (T) >1 (-) 5 (-) >0.05
rs141988944 chr1:53426251 SCP2 C - 13 T vs. G - - <1 (-) 0 (-) >0.05
rs57274810 chr1:53463070 SCP2 C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs17107638 chr1:53491502 SCP2 C - 13 T vs. C 0.033 (C) 0.283 (C) <1 (-) 0 (-) >0.05
rs56714774 chr1:53463043 SCP2 C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs77456695 chr1:53343996 ZYG11A C - 4 C vs. G 0.017 (C) 0.092 (C) <1 (-) 61 (-) >0.05
rs11206068 chr1:53470614 SCP2 C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs114618621 chr1:53556122 SLC1A7 C - 13 T vs. C 0.033 (T) - >1 (-) 0 (-) >0.05
rs6588449 chr1:53488234 SCP2 C - 13 A vs. G 0.067 (A) 0.367 (A) >1 (-) 0 (-) >0.05
rs4442320 chr1:53494091 SCP2 C - 13 A vs. C 0.092 (A) 0.4 (A) >1 (-) 0 (-) >0.05
rs6588453 chr1:53492434 SCP2 C - 13 A vs. T 0.058 (T) 0.358 (T) <1 (-) 0 (-) >0.05
rs6588452 chr1:53492412 SCP2 C - 13 T vs. C 0.067 (T) 0.367 (T) >1 (-) 0 (-) >0.05
rs75674851 chr1:53510237 SCP2 C - 13 A vs. G 0.033 (A) 0.283 (A) >1 (-) 0 (-) >0.05
rs78624382 chr1:53547188 PODN C - 13 T vs. G 0.033 (T) 0.233 (T) >1 (-) 0 (-) >0.05
rs17107652 chr1:53494825 SCP2 C - 13 A vs. G 0.033 (G) 0.283 (G) <1 (-) 0 (-) >0.05
rs72903149 chr1:53494738 SCP2 C - 13 C vs. G - 0.067 (C) >1 (-) 18 (-) >0.05

Association studies for this region [+]