SETD1A, chr16:30968615-30996437 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2305880 chr16:30999462 HSD3B7 All: C 108,990 15 T vs. C 0.25 (T) 0.083 (T) 0.91 (0.88-0.94) 26 (0-60) 5.21e-08
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs11640534 chr16:30949515 FBXL19 All: C 108,990 15 G vs. A 0.242 (G) 0.083 (G) 0.92 (0.89-0.95) 23 (0-58) 1.65e-06
rs12928852 chr16:30943988 FBXL19 All: C 108,990 15 C vs. T 0.242 (C) 0.075 (C) 0.92 (0.89-0.95) 24 (0-59) 1.75e-06
rs10782001 chr16:30942625 FBXL19 All: C 108,990 15 G vs. A 0.242 (G) 0.075 (G) 0.92 (0.89-0.95) 24 (0-59) 1.76e-06
rs12930545 chr16:30938811 FBXL19 All: C 108,990 15 A vs. G 0.25 (A) 0.075 (A) 0.92 (0.89-0.95) 24 (0-59) 1.76e-06
rs8050588 chr16:30937799 FBXL19 All: C 108,990 15 A vs. G 0.242 (A) 0.075 (A) 0.92 (0.89-0.95) 24 (0-59) 1.77e-06
rs10782002 chr16:30946506 FBXL19 All: C 108,990 15 A vs. G 0.242 (A) 0.083 (A) 0.92 (0.89-0.95) 23 (0-59) 1.78e-06
rs11150600 chr16:30940331 FBXL19 All: C 108,990 15 C vs. T 0.242 (C) 0.083 (C) 0.92 (0.89-0.95) 24 (0-59) 1.81e-06
rs12930657 chr16:30931968 FBXL19 [-2408bp] All: C 108,990 15 C vs. T 0.233 (C) - 0.92 (0.89-0.95) 24 (0-59) 1.81e-06
rs34873012 chr16:30945861 FBXL19 All: C 108,990 15 C vs. T - - 1.08 (1.05-1.12) 24 (0-59) 1.84e-06
rs9938050 chr16:30947904 FBXL19 All: C 108,990 15 A vs. G - - 1.08 (1.05-1.12) 23 (0-59) 1.86e-06
rs3813020 chr16:30934075 FBXL19 [-301bp] All: C 108,990 15 G vs. A 0.233 (G) 0.092 (G) 0.92 (0.89-0.95) 24 (0-59) 1.92e-06
rs12599631 chr16:30944248 FBXL19 All: C 108,990 15 G vs. A - - 1.08 (1.05-1.12) 24 (0-59) 2.01e-06
rs9319588 chr16:30930983 FBXL19 [-3393bp] All: C 108,990 15 C vs. T 0.242 (C) 0.067 (C) 0.92 (0.89-0.96) 24 (0-59) 2.69e-06
rs1458202 chr16:30953202 FBXL19 All: C 108,990 15 G vs. A 0.242 (G) 0.083 (G) 0.92 (0.89-0.96) 20 (0-56) 3.07e-06
rs8044030 chr16:30927990 FBXL19 [-6386bp] All: C 108,990 15 G vs. A - - 0.92 (0.88-0.95) 5 (0-56) 3.62e-06
rs35733741 chr16:30945887 FBXL19 All: C 108,990 15 G vs. A - - 0.92 (0.89-0.96) 4 (0-56) 5.56e-06
rs12917722 chr16:30948397 FBXL19 All: C 108,990 15 G vs. A 0.475 (G) 0.083 (A) 1.08 (1.05-1.12) 3 (0-55) 5.60e-06
rs12924903 chr16:30928970 FBXL19 [-5406bp] All: C 108,990 15 A vs. G 0.242 (A) 0.067 (A) 0.93 (0.90-0.96) 12 (0-50) 8.26e-06
rs4889685 chr16:30929444 FBXL19 [-4932bp] All: C 108,990 15 T vs. C - - 1.08 (1.04-1.12) 12 (0-50) 8.56e-06
rs12716978 chr16:30981544 SETD1A C - 13 C vs. G - - <1 (-) 27 (-) <1.00e-04
rs62055866 chr16:30969557 SETD1A C - 13 C vs. G - - >1 (-) 29 (-) <0.05
rs4346218 chr16:30980130 SETD1A C - 13 A vs. T 0.292 (T) - >1 (-) 20 (-) <0.05
rs9939558 chr16:31038687 STX4 [-5523bp] C - 13 A vs. T - - >1 (-) 5 (-) <0.05
rs11150604 chr16:31037020 STX4 [-7190bp] C - 13 A vs. T 0.442 (T) 0.042 (A) <1 (-) 2 (-) <0.05
rs13336347 chr16:30951566 FBXL19 C - 13 C vs. G - - <1 (-) 0 (-) <0.05
rs7200879 chr16:30947572 FBXL19 C - 13 A vs. G 0.15 (G) 0.075 (G) >1 (-) 45 (-) <0.05
rs35675346 chr16:30936081 FBXL19 C - 13 A vs. G 0.15 (A) 0.075 (A) <1 (-) 44 (-) <0.05
rs72799341 chr16:30936743 FBXL19 C - 13 A vs. G 0.15 (A) 0.075 (A) <1 (-) 45 (-) <0.05
rs7185007 chr16:30927509 FBXL19 [-6867bp] C - 13 T vs. C 0.15 (T) - <1 (-) 45 (-) <0.05
rs17855121 chr16:31004169 STX1B C - 13 T vs. C 0.192 (C) - >1 (-) 37 (-) <0.05
rs141391708 chr16:30979999 SETD1A C - 13 A vs. G - - >1 (-) 11 (-) <0.05
rs11642733 chr16:30969061 SETD1A C - 13 A vs. G 0.092 (A) - <1 (-) 8 (-) <0.05
rs75586365 chr16:30996363 SETD1A C - 13 T vs. C 0.083 (T) - <1 (-) 0 (-) <0.05
rs79974799 chr16:30996795 HSD3B7 C - 13 T vs. C 0.075 (T) - <1 (-) 0 (-) <0.05
rs11640210 chr16:30975071 SETD1A C - 13 T vs. C - - >1 (-) 0 (-) <0.05
rs112190455 chr16:30971437 SETD1A C - 13 T vs. C 0.092 (T) - <1 (-) 0 (-) <0.05
rs11647243 chr16:30965308 ORAI3 C - 13 A vs. G 0.092 (A) - <1 (-) 0 (-) <0.05
rs17849880 chr16:30999198 HSD3B7 C - 13 T vs. C 0.092 (T) - <1 (-) 0 (-) <0.05
rs76345698 chr16:30946165 FBXL19 C - 13 A vs. G 0.092 (A) - <1 (-) 0 (-) >0.05
rs77604316 chr16:30921487 CTF1 [+6606bp] C - 13 A vs. G 0.092 (A) - <1 (-) 0 (-) >0.05
rs111935448 chr16:30919807 CTF1 [+4926bp] C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs138453524 chr16:30936434 FBXL19 C - 3 A vs. G - - <1 (-) 0 (-) >0.05
rs7201018 chr16:31005389 STX1B C - 4 A vs. G - - <1 (-) 0 (-) >0.05
rs117126734 chr16:31000894 STX1B C - 12 T vs. C 0.008 (C) - >1 (-) 0 (-) >0.05
rs12928868 chr16:31008964 STX1B C - 3 T vs. C 0.025 (T) - <1 (-) 0 (-) >0.05
rs117891062 chr16:30976129 SETD1A C - 12 A vs. T 0.025 (A) - <1 (-) 0 (-) >0.05
rs55886019 chr16:30925000 FBXL19 [-9376bp] C - 13 T vs. G 0.283 (G) - <1 (-) 44 (-) >0.05
rs147901631 chr16:30941160 FBXL19 C - 13 T vs. C - - >1 (-) 45 (-) >0.05
rs144445645 chr16:30930561 FBXL19 [-3815bp] C - 13 A vs. G - - >1 (-) 44 (-) >0.05
rs28360556 chr16:30929167 FBXL19 [-5209bp] C - 13 A vs. T 0.3 (A) - >1 (-) 34 (-) >0.05

Association studies for this region [+]