SETD1A, chr16:30968615-30996437 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2305880 chr16:30999462 HSD3B7 All: C 108,990 15 T vs. C 0.25 (T) 0.083 (T) 0.91 (0.88-0.94) 26 (0-60) 5.21e-08
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs117291523 chr16:31035543 STX4 [-8667bp] C - 8 A vs. G 0.017 (A) - <1 (-) 0 (-) >0.05
rs138213568 chr16:30930652 FBXL19 [-3724bp] C - 13 T vs. C - - >1 (-) 43 (-) >0.05
rs12929007 chr16:30929696 FBXL19 [-4680bp] C - 13 C vs. G - - <1 (-) 33 (-) >0.05
rs56193946 chr16:30956651 FBXL19 C - 13 C vs. G 0.283 (G) - <1 (-) 45 (-) >0.05
rs72799368 chr16:30988943 SETD1A C - 13 A vs. G 0.275 (A) - >1 (-) 44 (-) >0.05
rs2054214 chr16:30971442 SETD1A C - 13 T vs. G 0.275 (G) - <1 (-) 45 (-) >0.05
rs72799363 chr16:30981884 SETD1A C - 13 T vs. C 0.267 (T) - >1 (-) 45 (-) >0.05
rs7184263 chr16:30933064 FBXL19 [-1312bp] C - 11 T vs. C - - <1 (-) 25 (-) >0.05
rs73526645 chr16:30931349 FBXL19 [-3027bp] C - 11 A vs. C - - >1 (-) 25 (-) >0.05
rs8050229 chr16:30981420 SETD1A C - 11 T vs. C - - <1 (-) 23 (-) >0.05
rs13333418 chr16:30987264 SETD1A C - 11 C vs. G - - <1 (-) 22 (-) >0.05
rs111907968 chr16:31037652 STX4 [-6558bp] C - 9 T vs. C 0.008 (T) - <1 (-) 9 (-) >0.05
rs72800841 chr16:31014247 STX1B C - 13 A vs. G 0.308 (A) - >1 (-) 48 (-) >0.05
rs12102485 chr16:30945722 FBXL19 C - 12 T vs. C - - >1 (-) 15 (-) >0.05
rs8055067 chr16:30922378 CTF1 [+7497bp] C - 11 A vs. G - - <1 (-) 22 (-) >0.05
rs9929927 chr16:30952646 FBXL19 C - 12 T vs. G - - >1 (-) 15 (-) >0.05
rs77353311 chr16:31010999 STX1B C - 11 A vs. G 0.142 (G) - <1 (-) 45 (-) >0.05
rs55731737 chr16:31017683 STX1B C - 13 C vs. G 0.292 (G) - <1 (-) 51 (-) >0.05
rs72800842 chr16:31015439 STX1B C - 13 A vs. C 0.292 (A) - >1 (-) 48 (-) >0.05
rs148085466 chr16:30928559 FBXL19 [-5817bp] C - 11 T vs. C - - <1 (-) 20 (-) >0.05
rs55908605 chr16:31015877 STX1B C - 13 T vs. C - - >1 (-) 48 (-) >0.05
rs72800849 chr16:31023414 STX1B [+1465bp] C - 13 A vs. C 0.292 (A) - >1 (-) 49 (-) >0.05
rs9788865 chr16:31009588 STX1B C - 13 T vs. C 0.317 (C) 0.008 (C) <1 (-) 41 (-) >0.05
rs150319029 chr16:31027969 STX1B [+6020bp] C - 13 T vs. C - - >1 (-) 49 (-) >0.05
rs4405566 chr16:30953174 FBXL19 C - 10 C vs. G - - <1 (-) 29 (-) >0.05
rs72800854 chr16:31036237 STX4 [-7973bp] C - 13 T vs. C 0.275 (T) - >1 (-) 49 (-) >0.05
rs8048593 chr16:30964309 ORAI3 C - 13 T vs. G - - <1 (-) 12 (-) >0.05
rs34212827 chr16:30999434 HSD3B7 C - 10 T vs. C - - >1 (-) 26 (-) >0.05
rs9940894 chr16:30962021 ORAI3 C - 10 T vs. C - - >1 (-) 29 (-) >0.05
rs72800845 chr16:31020921 STX1B C - 13 A vs. G 0.283 (A) - >1 (-) 49 (-) >0.05
rs72800846 chr16:31020922 STX1B C - 13 A vs. T 0.283 (A) - >1 (-) 49 (-) >0.05
chr16:31001862 chr16:31001862 STX1B C - 4 T vs. C - - >1 (-) 0 (-) >0.05
rs8054046 chr16:31043276 STX4 [-934bp] C - 9 T vs. C - - >1 (-) 11 (-) >0.05
rs146256717 chr16:30957804 FBXL19 C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs72800851 chr16:31023515 STX1B [+1566bp] C - 3 T vs. C 0.017 (T) - >1 (-) 0 (-) >0.05
rs143637028 chr16:30983082 SETD1A C - 10 A vs. T - - <1 (-) 0 (-) >0.05
rs148334254 chr16:31028797 STX1B [+6848bp] C - 10 A vs. G - - <1 (-) 15 (-) >0.05
rs149918713 chr16:30999369 HSD3B7 C - 3 T vs. C - - <1 (-) 0 (-) >0.05
rs7203711 chr16:31009025 STX1B C - 11 T vs. C - - >1 (-) 6 (-) >0.05
rs61185452 chr16:31010750 STX1B C - 11 T vs. C - - >1 (-) 6 (-) >0.05
rs9932822 chr16:31011451 STX1B C - 11 T vs. C - - >1 (-) 6 (-) >0.05
rs9932921 chr16:31011592 STX1B C - 11 T vs. G - - >1 (-) 6 (-) >0.05
rs61400892 chr16:31019762 STX1B C - 10 T vs. C - - <1 (-) 15 (-) >0.05
rs140505947 chr16:30986006 SETD1A C - 9 A vs. C - - >1 (-) 25 (-) >0.05
rs73528516 chr16:31008243 STX1B C - 10 T vs. C - - <1 (-) 0 (-) >0.05
rs77028234 chr16:30998643 HSD3B7 C - 10 C vs. G 0.008 (G) - <1 (-) 50 (-) >0.05
chr16:30998673 chr16:30998673 HSD3B7 C - 3 T vs. C - - >1 (-) 0 (-) >0.05
rs150521032 chr16:31046222 STX4 C - 10 T vs. C - - <1 (-) 0 (-) >0.05
rs28572417 chr16:30919674 CTF1 [+4793bp] C - 10 A vs. T - - <1 (-) 28 (-) >0.05
rs75585721 chr16:31033705 STX4 [-10505bp] C - 3 T vs. C 0.033 (C) - <1 (-) 0 (-) >0.05

Association studies for this region [+]