SLC1A7, chr1:53552855-53608289 +/- 50000 base pairs
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Most significant meta-analysis in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs79901635 chr1:53639682 CPT2 [-22419bp] C - 9 T vs. C 0.025 (T) - >1 (-) 0 (-) <1.00e-04

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs17107717 chr1:53503996 SCP2 C - 13 A vs. C 0.033 (A) 0.108 (A) >1 (-) 16 (-) >0.05
rs9662321 chr1:53503428 SCP2 C - 13 A vs. G 0.033 (G) 0.075 (G) <1 (-) 17 (-) >0.05
rs140905772 chr1:53577075 SLC1A7 C - 11 A vs. G - - >1 (-) 0 (-) >0.05
rs3766763 chr1:53514728 SCP2 C - 13 A vs. G 0.092 (G) 0.4 (G) <1 (-) 2 (-) >0.05
rs61769584 chr1:53646696 CPT2 [-15405bp] C - 11 A vs. T 0.017 (A) 0.025 (A) >1 (-) 49 (-) >0.05
rs59335351 chr1:53511507 SCP2 C - 13 A vs. G 0.033 (A) 0.267 (A) >1 (-) 0 (-) >0.05
rs74085596 chr1:53575945 SLC1A7 C - 10 T vs. C - - <1 (-) 7 (-) >0.05
rs75448253 chr1:53512354 SCP2 C - 13 T vs. G 0.033 (G) 0.267 (G) <1 (-) 0 (-) >0.05
rs922682 chr1:53577701 SLC1A7 C - 11 T vs. C 0.0 (C) 0.0 (C) >1 (-) 0 (-) >0.05
rs12567821 chr1:53512914 SCP2 C - 13 A vs. G 0.025 (A) 0.267 (A) >1 (-) 0 (-) >0.05
rs2170301 chr1:53505103 SCP2 C - 13 A vs. G 0.092 (A) 0.392 (A) >1 (-) 0 (-) >0.05
rs72903185 chr1:53502905 SCP2 C - 13 A vs. T 0.033 (A) 0.1 (A) >1 (-) 16 (-) >0.05
rs17107708 chr1:53502884 SCP2 C - 13 C vs. G 0.033 (G) 0.125 (G) <1 (-) 17 (-) >0.05
rs74085598 chr1:53576221 SLC1A7 C - 10 T vs. G - 0.05 (T) >1 (-) 7 (-) >0.05
rs55997677 chr1:53627373 SLC1A7 [+19084bp] C - 13 A vs. G 0.158 (A) - <1 (-) 0 (-) >0.05
rs1769289 chr1:53574123 SLC1A7 C - 11 T vs. C 0.0 (C) 0.0 (C) >1 (-) 0 (-) >0.05
rs11206085 chr1:53527619 PODN [-235bp] C - 13 A vs. T - - <1 (-) 0 (-) >0.05
rs77523182 chr1:53563442 SLC1A7 C - 13 C vs. G - - >1 (-) 0 (-) >0.05
rs3766780 chr1:53578293 SLC1A7 C - 10 A vs. G - 0.167 (G) >1 (-) 3 (-) >0.05
rs3820200 chr1:53517283 SCP2 C - 13 C vs. G 0.033 (A) 0.292 (G) <1 (-) 0 (-) >0.05
rs60576668 chr1:53517349 SCP2 C - 13 A vs. G 0.067 (A) 0.367 (A) >1 (-) 0 (-) >0.05
rs77562670 chr1:53506133 SCP2 C - 12 A vs. C - - >1 (-) 0 (-) >0.05
rs3766762 chr1:53514516 SCP2 C - 13 T vs. C 0.033 (C) 0.283 (C) <1 (-) 0 (-) >0.05
rs60130096 chr1:53503202 SCP2 C - 12 C vs. G - - >1 (-) 0 (-) >0.05
rs3766764 chr1:53515305 SCP2 C - 13 A vs. G 0.058 (A) 0.317 (A) >1 (-) 0 (-) >0.05
rs17107702 chr1:53502877 SCP2 C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs7550236 chr1:53520126 SCP2 [+2751bp] C - 13 T vs. C 0.092 (C) 0.4 (C) <1 (-) 4 (-) >0.05
rs72905134 chr1:53518658 SCP2 [+1283bp] C - 13 A vs. G 0.075 (A) 0.358 (A) >1 (-) 0 (-) >0.05
rs12569270 chr1:53519795 SCP2 [+2420bp] C - 13 T vs. C 0.092 (C) 0.4 (C) <1 (-) 11 (-) >0.05
rs72905166 chr1:53531298 PODN C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs61565555 chr1:53652786 CPT2 [-9315bp] C - 11 T vs. C 0.017 (C) 0.483 (C) <1 (-) 14 (-) >0.05
rs2275456 chr1:53536025 PODN C - 13 T vs. C 0.033 (C) 0.25 (C) <1 (-) 0 (-) >0.05
rs17107843 chr1:53538231 PODN C - 13 T vs. C 0.033 (T) - >1 (-) 0 (-) >0.05
rs78344136 chr1:53536231 PODN C - 13 A vs. G - 0.25 (G) <1 (-) 0 (-) >0.05
rs10493172 chr1:53523904 PODN [-3950bp] C - 13 A vs. G 0.033 (G) 0.267 (G) <1 (-) 0 (-) >0.05
rs59611754 chr1:53536335 PODN C - 13 A vs. G 0.033 (G) 0.25 (G) <1 (-) 0 (-) >0.05
rs116005653 chr1:53555954 SLC1A7 C - 9 T vs. C 0.017 (T) - <1 (-) 37 (-) >0.05
rs59750828 chr1:53510126 SCP2 C - 11 T vs. C - - <1 (-) 0 (-) >0.05
rs59926965 chr1:53536315 PODN C - 13 A vs. G - 0.25 (G) <1 (-) 0 (-) >0.05
rs57390406 chr1:53658039 CPT2 [-4062bp] C - 13 A vs. G 0.117 (G) 0.208 (G) <1 (-) 20 (-) >0.05
rs10788948 chr1:53521486 SCP2 [+4111bp] C - 13 C vs. G 0.092 (C) 0.392 (C) >1 (-) 2 (-) >0.05
rs17107836 chr1:53536452 PODN C - 13 A vs. G 0.033 (G) 0.25 (G) <1 (-) 0 (-) >0.05
rs12092559 chr1:53584825 SLC1A7 C - 13 T vs. G 0.067 (T) - <1 (-) 0 (-) >0.05
rs11206083 chr1:53522317 SCP2 [+4942bp] C - 13 A vs. G - - <1 (-) 2 (-) >0.05
rs13376279 chr1:53645754 CPT2 [-16347bp] C - 12 T vs. C - 0.025 (C) <1 (-) 45 (-) >0.05
rs3766788 chr1:53587701 SLC1A7 C - 13 A vs. G 0.067 (A) 0.158 (A) <1 (-) 0 (-) >0.05
rs7529260 chr1:53510822 SCP2 C - 13 A vs. G 0.033 (A) 0.083 (A) >1 (-) 12 (-) >0.05
rs117898727 chr1:53620993 SLC1A7 [+12704bp] C - 6 T vs. C - 0.292 (T) <1 (-) 61 (-) >0.05
rs17107724 chr1:53507145 SCP2 C - 13 T vs. C 0.033 (C) 0.092 (C) <1 (-) 13 (-) >0.05
rs17107713 chr1:53503239 SCP2 C - 11 T vs. G - - <1 (-) 0 (-) >0.05

These results originate from GWAS-only meta-analyses for which no additional data can be shared publicly. See Methods for further details.