SLC1A7, chr1:53552855-53608289 +/- 50000 base pairs
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Most significant meta-analysis in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs79901635 chr1:53639682 CPT2 [-22419bp] C - 9 T vs. C 0.025 (T) - >1 (-) 0 (-) <1.00e-04

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6672178 chr1:53629849 SLC1A7 [+21560bp] C - 13 T vs. C 0.433 (T) 0.375 (C) >1 (-) 0 (-) >0.05
rs78030880 chr1:53586010 SLC1A7 C - 13 T vs. C 0.067 (T) - >1 (-) 0 (-) >0.05
rs72903200 chr1:53506814 SCP2 C - 13 A vs. G - - >1 (-) 13 (-) >0.05
rs11206103 chr1:53589130 SLC1A7 C - 13 A vs. G 0.1 (A) 0.158 (A) >1 (-) 0 (-) >0.05
rs10788947 chr1:53513168 SCP2 C - 13 A vs. G 0.025 (A) - >1 (-) 0 (-) >0.05
rs74550275 chr1:53514385 SCP2 C - 11 A vs. G - - <1 (-) 0 (-) >0.05
rs17107812 chr1:53532920 PODN C - 13 A vs. C 0.033 (A) 0.25 (A) >1 (-) 0 (-) >0.05
rs78096409 chr1:53536236 PODN C - 13 T vs. C - 0.233 (C) <1 (-) 0 (-) >0.05
rs55691495 chr1:53624849 SLC1A7 [+16560bp] C - 12 C vs. G 0.167 (C) 0.333 (C) >1 (-) 0 (-) >0.05
rs76248987 chr1:53532984 PODN C - 13 T vs. C 0.033 (C) 0.25 (C) <1 (-) 0 (-) >0.05
rs78175275 chr1:53535055 PODN C - 13 A vs. G 0.033 (A) 0.25 (A) >1 (-) 0 (-) >0.05
rs6692772 chr1:53629190 SLC1A7 [+20901bp] C - 13 A vs. G 0.417 (A) 0.358 (G) >1 (-) 0 (-) >0.05
rs1531698 chr1:53535085 PODN C - 13 T vs. C 0.033 (T) 0.25 (T) >1 (-) 0 (-) >0.05
rs6695567 chr1:53629585 SLC1A7 [+21296bp] C - 13 A vs. G 0.433 (A) 0.375 (G) >1 (-) 0 (-) >0.05
rs1531700 chr1:53535205 PODN C - 13 T vs. C 0.033 (T) 0.25 (T) >1 (-) 0 (-) >0.05
rs150105816 chr1:53603241 SLC1A7 C - 8 T vs. C - - >1 (-) 0 (-) >0.05
rs61768116 chr1:53585254 SLC1A7 C - 13 A vs. G 0.05 (A) - >1 (-) 0 (-) >0.05
rs1531702 chr1:53535269 PODN C - 13 A vs. G 0.033 (A) 0.25 (A) >1 (-) 0 (-) >0.05
rs1531703 chr1:53535443 PODN C - 13 A vs. G 0.033 (A) 0.25 (A) >1 (-) 0 (-) >0.05
rs4926950 chr1:53534588 PODN C - 13 T vs. C 0.033 (T) 0.033 (T) <1 (-) 0 (-) >0.05
rs56054926 chr1:53527996 PODN C - 13 A vs. G - 0.383 (G) <1 (-) 20 (-) >0.05
rs6672276 chr1:53629901 SLC1A7 [+21612bp] C - 13 A vs. C 0.433 (A) - >1 (-) 0 (-) >0.05
rs3766767 chr1:53560301 SLC1A7 C - 13 T vs. C 0.242 (T) 0.467 (T) >1 (-) 0 (-) >0.05
rs74082410 chr1:53528955 PODN C - 13 A vs. G 0.025 (A) 0.033 (A) <1 (-) 0 (-) >0.05
rs2306459 chr1:53554305 SLC1A7 C - 13 A vs. G 0.033 (A) 0.425 (A) <1 (-) 0 (-) >0.05
rs61181386 chr1:53527132 PODN [-722bp] C - 13 T vs. C 0.067 (T) 0.367 (T) >1 (-) 0 (-) >0.05
rs4926948 chr1:53533333 PODN C - 13 A vs. G 0.067 (G) 0.117 (G) >1 (-) 15 (-) >0.05
rs11588200 chr1:53512519 SCP2 C - 13 T vs. G 0.025 (T) 0.033 (T) >1 (-) 0 (-) >0.05
rs10888762 chr1:53519218 SCP2 [+1843bp] C - 13 T vs. C 0.092 (T) 0.4 (T) >1 (-) 0 (-) >0.05
rs11206079 chr1:53513423 SCP2 C - 13 T vs. C 0.025 (T) 0.033 (T) >1 (-) 0 (-) >0.05
rs4348672 chr1:53513837 SCP2 C - 13 C vs. G 0.017 (C) 0.033 (C) >1 (-) 0 (-) >0.05
rs4599997 chr1:53513768 SCP2 C - 13 C vs. G 0.017 (G) 0.033 (G) <1 (-) 0 (-) >0.05
rs6664654 chr1:53514350 SCP2 C - 13 T vs. C 0.025 (T) 0.033 (T) >1 (-) 0 (-) >0.05
rs57866820 chr1:53577370 SLC1A7 C - 10 T vs. C - - >1 (-) 9 (-) >0.05
rs2896792 chr1:53513982 SCP2 C - 13 T vs. C - 0.033 (T) >1 (-) 0 (-) >0.05
rs6588469 chr1:53630705 SLC1A7 [+22416bp] C - 13 T vs. C 0.408 (T) 0.375 (C) >1 (-) 0 (-) >0.05
rs6588468 chr1:53630648 SLC1A7 [+22359bp] C - 13 A vs. G 0.425 (G) 0.375 (A) <1 (-) 0 (-) >0.05
rs11206081 chr1:53514066 SCP2 C - 13 C vs. G 0.025 (G) 0.033 (G) <1 (-) 0 (-) >0.05
rs60537900 chr1:53519464 SCP2 [+2089bp] C - 13 T vs. C 0.025 (T) - >1 (-) 0 (-) >0.05
rs60905879 chr1:53519646 SCP2 [+2271bp] C - 13 A vs. G 0.025 (A) 0.033 (A) >1 (-) 0 (-) >0.05
rs58313958 chr1:53519716 SCP2 [+2341bp] C - 13 T vs. C 0.025 (C) - <1 (-) 0 (-) >0.05
rs55655352 chr1:53633554 SLC1A7 [+25265bp] C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs61312635 chr1:53526879 PODN [-975bp] C - 13 T vs. C 0.067 (C) 0.35 (C) <1 (-) 0 (-) >0.05
rs6697308 chr1:53534687 PODN C - 13 C vs. G 0.033 (G) 0.25 (G) <1 (-) 0 (-) >0.05
rs58924052 chr1:53565054 SLC1A7 C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs2275453 chr1:53535876 PODN C - 13 T vs. C - 0.25 (C) <1 (-) 0 (-) >0.05
rs72670894 chr1:53628121 SLC1A7 [+19832bp] C - 13 T vs. C 0.167 (C) 0.333 (C) >1 (-) 0 (-) >0.05
rs12096165 chr1:53518049 SCP2 [+674bp] C - 13 T vs. G 0.025 (G) - <1 (-) 0 (-) >0.05
rs144075046 chr1:53573340 SLC1A7 C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs17107767 chr1:53517997 SCP2 [+622bp] C - 13 T vs. C 0.017 (C) - <1 (-) 0 (-) >0.05

These results originate from GWAS-only meta-analyses for which no additional data can be shared publicly. See Methods for further details.