SLC1A7, chr1:53552855-53608289 +/- 50000 base pairs
View on:

Most significant meta-analysis in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs79901635 chr1:53639682 CPT2 [-22419bp] C - 9 T vs. C 0.025 (T) - >1 (-) 0 (-) <1.00e-04

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6421492 chr1:53511341 SCP2 C - 13 A vs. T 0.058 (A) 0.1 (A) >1 (-) 1 (-) >0.05
rs11577650 chr1:53519436 SCP2 [+2061bp] C - 13 A vs. G 0.025 (G) - <1 (-) 0 (-) >0.05
rs12070497 chr1:53518235 SCP2 [+860bp] C - 13 T vs. C 0.025 (T) 0.033 (T) >1 (-) 0 (-) >0.05
rs7534827 chr1:53515596 SCP2 C - 13 A vs. G 0.025 (G) 0.05 (G) <1 (-) 0 (-) >0.05
rs4926946 chr1:53515101 SCP2 C - 13 A vs. C 0.025 (A) 0.033 (A) >1 (-) 0 (-) >0.05
rs17107765 chr1:53517698 SCP2 [+323bp] C - 13 A vs. G 0.025 (A) 0.033 (A) >1 (-) 0 (-) >0.05
rs4282747 chr1:53517654 SCP2 [+279bp] C - 13 A vs. G 0.025 (G) - <1 (-) 0 (-) >0.05
rs6677541 chr1:53514628 SCP2 C - 13 A vs. G 0.025 (G) 0.033 (G) <1 (-) 0 (-) >0.05
rs3766779 chr1:53578174 SLC1A7 C - 10 T vs. C - 0.167 (T) >1 (-) 11 (-) >0.05
rs77980215 chr1:53528502 PODN C - 13 T vs. C 0.025 (T) 0.308 (T) >1 (-) 0 (-) >0.05
rs12566810 chr1:53533513 PODN C - 13 A vs. C - 0.25 (A) >1 (-) 0 (-) >0.05
rs72905172 chr1:53533756 PODN C - 13 T vs. C 0.033 (C) 0.25 (C) <1 (-) 0 (-) >0.05
rs17108032 chr1:53580585 SLC1A7 C - 7 A vs. G - - <1 (-) 0 (-) >0.05
rs2404211 chr1:53607666 SLC1A7 C - 13 T vs. C 0.333 (C) 0.292 (C) >1 (-) 36 (-) >0.05
rs72905174 chr1:53533862 PODN C - 13 A vs. G 0.033 (A) 0.25 (A) >1 (-) 0 (-) >0.05
rs74082414 chr1:53533768 PODN C - 13 T vs. C 0.033 (C) 0.25 (C) <1 (-) 0 (-) >0.05
rs56232741 chr1:53628247 SLC1A7 [+19958bp] C - 13 C vs. G 0.167 (C) 0.333 (C) <1 (-) 0 (-) >0.05
rs8871 chr1:53516999 SCP2 C - 13 A vs. C 0.067 (C) 0.367 (C) <1 (-) 0 (-) >0.05
rs17107837 chr1:53537699 PODN C - 13 A vs. G 0.033 (G) 0.108 (G) >1 (-) 1 (-) >0.05
rs13376501 chr1:53512285 SCP2 C - 13 T vs. C 0.025 (C) - <1 (-) 0 (-) >0.05
rs17107814 chr1:53534248 PODN C - 13 A vs. G 0.033 (G) 0.25 (G) <1 (-) 0 (-) >0.05
rs60891908 chr1:53533973 PODN C - 13 A vs. C 0.033 (C) 0.25 (C) <1 (-) 0 (-) >0.05
rs56657381 chr1:53534143 PODN C - 13 C vs. G 0.033 (G) 0.25 (G) <1 (-) 0 (-) >0.05
rs7549922 chr1:53608638 SLC1A7 [+349bp] C - 13 A vs. C 0.342 (C) 0.292 (C) >1 (-) 36 (-) >0.05
rs56048633 chr1:53627785 SLC1A7 [+19496bp] C - 13 T vs. G - - >1 (-) 0 (-) >0.05
rs143144101 chr1:53517930 SCP2 [+555bp] C - 11 A vs. C - - >1 (-) 0 (-) >0.05
rs61769586 chr1:53649822 CPT2 [-12279bp] C - 11 T vs. C - - <1 (-) 49 (-) >0.05
rs147286884 chr1:53657383 CPT2 [-4718bp] C - 11 A vs. C - - <1 (-) 52 (-) >0.05
rs4500254 chr1:53633353 SLC1A7 [+25064bp] C - 13 A vs. G - - <1 (-) 2 (-) >0.05
rs4926949 chr1:53534257 PODN C - 13 T vs. G 0.042 (G) 0.033 (G) >1 (-) 0 (-) >0.05
rs17107756 chr1:53516017 SCP2 C - 13 C vs. G 0.025 (C) 0.033 (C) >1 (-) 0 (-) >0.05
rs1580356 chr1:53524715 PODN [-3139bp] C - 13 A vs. G 0.033 (A) 0.075 (A) >1 (-) 0 (-) >0.05
rs145250169 chr1:53526136 PODN [-1718bp] C - 11 C vs. G - - <1 (-) 33 (-) >0.05
rs7552336 chr1:53510831 SCP2 C - 13 A vs. C 0.025 (A) 0.033 (A) >1 (-) 0 (-) >0.05
rs1531699 chr1:53535175 PODN C - 13 T vs. C 0.042 (C) 0.25 (C) <1 (-) 0 (-) >0.05
rs12088481 chr1:53511229 SCP2 C - 13 A vs. G 0.025 (A) 0.033 (A) >1 (-) 0 (-) >0.05
rs72670888 chr1:53611590 SLC1A7 [+3301bp] C - 13 A vs. T 0.167 (A) 0.317 (A) <1 (-) 0 (-) >0.05
rs11808284 chr1:53504411 SCP2 C - 13 A vs. G 0.025 (A) 0.033 (A) >1 (-) 0 (-) >0.05
rs11590871 chr1:53510671 SCP2 C - 13 A vs. G 0.025 (G) 0.033 (G) <1 (-) 0 (-) >0.05
rs12568971 chr1:53537833 PODN C - 13 T vs. G 0.067 (T) 0.358 (T) >1 (-) 19 (-) >0.05
rs17107774 chr1:53520736 SCP2 [+3361bp] C - 13 T vs. C 0.067 (T) 0.35 (T) <1 (-) 0 (-) >0.05
rs72670889 chr1:53611641 SLC1A7 [+3352bp] C - 13 A vs. G 0.167 (A) 0.317 (A) <1 (-) 0 (-) >0.05
rs79392928 chr1:53532006 PODN C - 13 A vs. T 0.033 (A) 0.208 (A) >1 (-) 0 (-) >0.05
rs57606030 chr1:53609303 SLC1A7 [+1014bp] C - 13 A vs. G 0.167 (G) 0.317 (G) >1 (-) 0 (-) >0.05
rs12565998 chr1:53618312 SLC1A7 [+10023bp] C - 13 A vs. G 0.167 (G) 0.333 (G) >1 (-) 0 (-) >0.05
rs17107786 chr1:53525644 PODN [-2210bp] C - 13 T vs. C 0.033 (T) 0.083 (T) >1 (-) 0 (-) >0.05
rs58754156 chr1:53618037 SLC1A7 [+9748bp] C - 13 A vs. C 0.167 (A) 0.325 (A) <1 (-) 0 (-) >0.05
rs11580093 chr1:53532609 PODN C - 13 T vs. C 0.033 (C) 0.033 (C) >1 (-) 0 (-) >0.05
rs17107835 chr1:53536361 PODN C - 13 T vs. C 0.033 (T) 0.108 (T) <1 (-) 2 (-) >0.05
rs78339745 chr1:53531019 PODN C - 13 T vs. C - 0.267 (T) >1 (-) 0 (-) >0.05

These results originate from GWAS-only meta-analyses for which no additional data can be shared publicly. See Methods for further details.