SLC45A3, chr1:205626979-205649587 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs3747973 chr1:205677148 NUCKS1 [-4799bp] All: C 108,990 15 A vs. G 0.383 (A) 0.35 (G) 0.89 (0.86-0.92) 38 (0-66) 1.69e-12
Meta_image?name=rs3747973

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs3747973 chr1:205677148 NUCKS1 [-4799bp] All: C 108,990 15 A vs. G 0.383 (A) 0.35 (G) 0.89 (0.86-0.92) 38 (0-66) 1.69e-12
rs12748961 chr1:205676263 NUCKS1 [-5684bp] All: C 108,990 15 C vs. T 0.033 (C) 0.375 (C) 1.15 (1.09-1.20) 14 (0-52) 3.50e-08
rs12118655 chr1:205663478 SLC45A3 [+13891bp] All: C 108,990 15 G vs. A 0.033 (G) 0.358 (G) 1.14 (1.09-1.20) 9 (0-47) 4.38e-08
rs11240554 chr1:205671644 NUCKS1 [-10303bp] All: C 108,990 15 T vs. C 0.283 (T) 0.425 (T) 0.91 (0.88-0.95) 6 (0-57) 6.40e-07
rs1772140 chr1:205672482 NUCKS1 [-9465bp] All: C 108,990 15 A vs. G 0.0 (A) 0.2 (A) 0.79 (0.72-0.87) 4 (0-56) 6.83e-07
rs823098 chr1:205670726 NUCKS1 [-11221bp] All: C 108,990 15 A vs. G 0.017 (A) 0.2 (A) 0.79 (0.72-0.87) 7 (0-43) 7.57e-07
rs3805 chr1:205683355 NUCKS1 All: C 108,990 15 G vs. T 0.017 (G) 0.383 (G) 1.15 (1.09-1.21) 0 (0-44) 1.19e-06
rs823093 chr1:205689227 NUCKS1 All: C 108,990 15 G vs. A 0.0 (G) 0.175 (G) 0.80 (0.73-0.88) 3 (0-55) 2.22e-06
rs1772146 chr1:205696521 NUCKS1 All: C 108,990 15 T vs. G - 0.158 (G) 1.25 (1.14-1.37) 3 (0-55) 2.36e-06
rs1620334 chr1:205697845 NUCKS1 All: C 108,990 15 C vs. T 0.0 (C) 0.175 (C) 0.80 (0.73-0.88) 3 (0-55) 2.41e-06
rs1772147 chr1:205696671 NUCKS1 All: C 108,990 15 G vs. A 0.017 (G) 0.175 (G) 0.80 (0.73-0.88) 3 (0-55) 2.69e-06
rs823108 chr1:205693601 NUCKS1 All: C 108,990 15 T vs. C 0.0 (T) 0.167 (T) 0.80 (0.73-0.88) 0 (0-53) 2.70e-06
rs12402185 chr1:205655549 SLC45A3 [+5962bp] All: C 108,990 15 G vs. T - 0.192 (T) 1.25 (1.14-1.37) 11 (0-49) 3.97e-06
rs61824663 chr1:205651850 SLC45A3 [+2263bp] All: C 108,990 15 G vs. A - - 1.25 (1.13-1.37) 11 (0-49) 5.32e-06
rs4601639 chr1:205656583 SLC45A3 [+6996bp] All: C 108,990 15 C vs. T 0.308 (C) 0.45 (C) 0.92 (0.89-0.95) 31 (0-63) 7.18e-06
rs4245718 chr1:205652472 SLC45A3 [+2885bp] All: C 108,990 15 A vs. G 0.308 (A) 0.442 (A) 0.92 (0.89-0.96) 31 (0-63) 9.23e-06
rs868844 chr1:205646646 SLC45A3 All: C 108,990 15 G vs. A 0.308 (G) 0.442 (G) 0.92 (0.89-0.96) 28 (0-61) 1.25e-05
rs4951255 chr1:205645063 SLC45A3 All: C 108,990 15 A vs. C 0.308 (A) 0.442 (A) 0.92 (0.89-0.96) 28 (0-61) 1.31e-05
rs112215351 chr1:205675429 NUCKS1 [-6518bp] All: C 108,990 15 T vs. C - - 1.10 (1.05-1.14) 0 (0-45) 1.94e-05
rs7513645 chr1:205698026 NUCKS1 All: C 108,990 15 A vs. G 0.292 (A) 0.442 (A) 0.93 (0.89-0.96) 30 (0-62) 2.82e-05
rs3761919 chr1:205694720 NUCKS1 All: C 108,990 15 A vs. G 0.3 (A) 0.442 (A) 0.93 (0.89-0.96) 31 (0-63) 2.98e-05
rs1935025 chr1:205692084 NUCKS1 All: C 108,990 15 A vs. C 0.3 (A) 0.442 (A) 0.93 (0.89-0.96) 33 (0-64) 4.58e-05
rs12037559 chr1:205661964 SLC45A3 [+12377bp] All: C 108,990 15 T vs. C 0.283 (T) 0.433 (T) 0.93 (0.89-0.96) 29 (0-62) 4.60e-05
rs3747972 chr1:205677335 NUCKS1 [-4612bp] C - 13 T vs. C - - >1 (-) 50 (-) <1.00e-04
rs61824662 chr1:205649447 SLC45A3 All: C 108,990 15 G vs. A - 0.192 (A) 1.23 (1.11-1.35) 0 (0-50) 5.02e-05
rs6673687 chr1:205670369 NUCKS1 [-11578bp] C - 13 A vs. T 0.408 (T) 0.425 (T) >1 (-) 50 (-) <1.00e-04
rs71633561 chr1:205699075 NUCKS1 C - 13 C vs. G - 0.383 (C) >1 (-) 54 (-) <1.00e-04
rs12030754 chr1:205678043 NUCKS1 [-3904bp] C - 13 C vs. G 0.275 (C) 0.425 (C) <1 (-) 29 (-) <1.00e-04
rs823094 chr1:205689807 NUCKS1 All: C 108,990 15 T vs. G 0.475 (T) - 0.94 (0.91-0.97) 20 (0-57) 8.43e-05
rs6693913 chr1:205654061 SLC45A3 [+4474bp] C - 13 C vs. G 0.308 (C) 0.442 (C) <1 (-) 39 (-) <1.00e-04
rs4951023 chr1:205691546 NUCKS1 C - 13 A vs. G - - <1 (-) 42 (-) <0.05
rs1891091 chr1:205661418 SLC45A3 [+11831bp] C - 13 T vs. C 0.033 (T) 0.358 (T) >1 (-) 55 (-) <0.05
rs951366 chr1:205685352 NUCKS1 C - 13 T vs. C 0.417 (C) 0.433 (C) >1 (-) 43 (-) <0.05
rs11240551 chr1:205641826 SLC45A3 C - 13 C vs. G 0.333 (C) 0.45 (C) <1 (-) 35 (-) <0.05
rs4951258 chr1:205691316 NUCKS1 C - 13 A vs. G - - <1 (-) 42 (-) <0.05
rs12132270 chr1:205660940 SLC45A3 [+11353bp] C - 13 T vs. C 0.033 (T) 0.367 (T) >1 (-) 52 (-) <0.05
rs10900522 chr1:205684067 NUCKS1 All: C 102,085 14 C vs. T 0.283 (C) 0.442 (C) 0.93 (0.89-0.96) 18 (0-56) 1.93e-04
rs823106 chr1:205656453 SLC45A3 [+6866bp] C - 13 C vs. G 0.025 (G) 0.367 (G) <1 (-) 48 (-) <0.05
rs11580015 chr1:205676088 NUCKS1 [-5859bp] All: C 108,990 15 G vs. C 0.45 (G) - 0.95 (0.92-0.98) 15 (0-52) 0.001
rs72750964 chr1:205675240 NUCKS1 [-6707bp] All: C 108,990 15 C vs. T 0.425 (C) - 0.95 (0.92-0.98) 14 (0-52) 0.001
rs12737668 chr1:205656024 SLC45A3 [+6437bp] C - 13 C vs. G - - <1 (-) 24 (-) <0.05
rs12404824 chr1:205655820 SLC45A3 [+6233bp] C - 13 C vs. G - 0.192 (G) >1 (-) 22 (-) <0.05
rs75506911 chr1:205666272 NUCKS1 [-15675bp] C - 13 T vs. C 0.1 (T) - <1 (-) 34 (-) <0.05
rs6676110 chr1:205662977 SLC45A3 [+13390bp] C - 13 A vs. G 0.108 (A) 0.367 (A) >1 (-) 42 (-) <0.05
rs10751444 chr1:205662144 SLC45A3 [+12557bp] C - 13 T vs. C 0.108 (C) 0.367 (C) <1 (-) 43 (-) <0.05
rs6593964 chr1:205662337 SLC45A3 [+12750bp] C - 13 A vs. C 0.108 (C) 0.367 (C) <1 (-) 42 (-) <0.05
rs140020090 chr1:205681595 NUCKS1 [-352bp] C - 13 C vs. G - - >1 (-) 20 (-) <0.05
rs6685188 chr1:205653756 SLC45A3 [+4169bp] C - 13 T vs. C 0.117 (T) 0.367 (T) >1 (-) 21 (-) <0.05
rs1772136 chr1:205651477 SLC45A3 [+1890bp] C - 13 T vs. C - - <1 (-) 6 (-) <0.05
rs1775153 chr1:205650271 SLC45A3 [+684bp] C - 13 T vs. G 0.133 (T) 0.367 (T) >1 (-) 17 (-) <0.05

Association studies for this region [+]