SLC45A3, chr1:205626979-205649587 +/- 50000 base pairs
View on:

Most significant meta-analysis in this region
Append your own data and create meta-analysis

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs3747973 chr1:205677148 NUCKS1 [-4799bp] All: C 108,990 15 A vs. G 0.383 (A) 0.35 (G) 0.89 (0.86-0.92) 38 (0-66) 1.69e-12
Meta_image?name=rs3747973

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs1418549 chr1:205644848 SLC45A3 C - 13 C vs. G 0.058 (G) 0.367 (G) <1 (-) 50 (-) <0.05
rs4951254 chr1:205642390 SLC45A3 C - 13 T vs. C 0.067 (T) 0.367 (T) >1 (-) 51 (-) <0.05
rs823105 chr1:205657570 SLC45A3 [+7983bp] All: C 108,990 15 G vs. A 0.425 (G) - 0.96 (0.93-0.99) 0 (0-49) 0.006
rs2153904 chr1:205642790 SLC45A3 C - 13 T vs. G 0.042 (T) 0.367 (T) >1 (-) 58 (-) <0.05
rs12024592 chr1:205598410 ELK4 C - 13 T vs. C - 0.35 (C) >1 (-) 0 (-) <0.05
rs72750963 chr1:205673252 NUCKS1 [-8695bp] C - 10 T vs. C 0.042 (T) - >1 (-) 0 (-) <0.05
rs146088191 chr1:205603775 ELK4 [+2685bp] C - 3 T vs. C - - <1 (-) 3 (-) <0.05
rs823095 chr1:205679239 NUCKS1 [-2708bp] C - 13 A vs. G 0.475 (G) - >1 (-) 28 (-) <0.05
rs823092 chr1:205687873 NUCKS1 C - 13 A vs. T 0.033 (A) 0.175 (A) <1 (-) 35 (-) <0.05
rs823097 chr1:205681370 NUCKS1 [-577bp] C - 13 A vs. G 0.475 (G) - >1 (-) 27 (-) <0.05
rs115919272 chr1:205652791 SLC45A3 [+3204bp] C - 9 A vs. G 0.033 (A) - <1 (-) 0 (-) <0.05
rs1775154 chr1:205696615 NUCKS1 C - 13 A vs. T 0.475 (T) - >1 (-) 25 (-) <0.05
rs823101 chr1:205667006 NUCKS1 [-14941bp] All: C 108,990 15 T vs. C 0.433 (T) - 0.96 (0.93-0.99) 8 (0-44) 0.017
rs1172198 chr1:205662718 SLC45A3 [+13131bp] All: C 108,990 15 G vs. A 0.425 (G) - 0.96 (0.93-0.99) 5 (0-56) 0.018
rs10494873 chr1:205694363 NUCKS1 All: C 96,250 12 G vs. C - - 0.67 (0.48-0.94) 0 (0-44) 0.020
rs7555776 chr1:205626332 SLC45A3 [-647bp] C - 12 A vs. G 0.058 (A) - >1 (-) 0 (-) <0.05
rs9438391 chr1:205681677 NUCKS1 [-270bp] C - 13 A vs. G 0.058 (G) 0.408 (A) <1 (-) 51 (-) <0.05
rs61824660 chr1:205643365 SLC45A3 C - 13 T vs. C 0.4 (C) - >1 (-) 0 (-) <0.05
rs871454 chr1:205635948 SLC45A3 C - 13 A vs. G - - <1 (-) 11 (-) <0.05
rs6593965 chr1:205683280 NUCKS1 C - 4 T vs. C 0.0 (T) 0.0 (T) <1 (-) 26 (-) <0.05
rs1772145 chr1:205695695 NUCKS1 C - 13 T vs. C 0.033 (C) 0.442 (T) <1 (-) 50 (-) <0.05
rs16856215 chr1:205693136 NUCKS1 All: C 96,250 12 G vs. T - - 0.70 (0.50-0.97) 0 (0-44) 0.030
rs77992859 chr1:205686283 NUCKS1 C - 9 T vs. C - - <1 (-) 0 (-) <0.05
rs823096 chr1:205679887 NUCKS1 [-2060bp] C - 13 T vs. G 0.458 (G) - >1 (-) 9 (-) <0.05
rs1094647 chr1:205655378 SLC45A3 [+5791bp] C - 13 A vs. G 0.425 (G) - >1 (-) 0 (-) <0.05
rs11581303 chr1:205608153 ELK4 [+7063bp] C - 13 A vs. G 0.3 (G) 0.383 (G) >1 (-) 0 (-) <0.05
rs11582805 chr1:205653056 SLC45A3 [+3469bp] C - 13 T vs. C - - >1 (-) 1 (-) <0.05
rs12746159 chr1:205609672 ELK4 [+8582bp] C - 13 C vs. G 0.283 (G) 0.375 (G) >1 (-) 3 (-) <0.05
rs7518313 chr1:205606850 ELK4 [+5760bp] C - 13 T vs. C 0.3 (T) 0.375 (T) <1 (-) 0 (-) <0.05
rs11577251 chr1:205590152 ELK4 C - 13 A vs. G - - >1 (-) 0 (-) <0.05
rs1417725 chr1:205671167 NUCKS1 [-10780bp] C - 13 A vs. G 0.042 (A) - <1 (-) 47 (-) >0.05
rs12410695 chr1:205623139 SLC45A3 [-3840bp] C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs16856106 chr1:205631058 SLC45A3 C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs34888532 chr1:205625569 SLC45A3 [-1410bp] C - 13 T vs. C 0.033 (C) 0.325 (C) >1 (-) 0 (-) >0.05
rs1772135 chr1:205651483 SLC45A3 [+1896bp] C - 13 T vs. C - - <1 (-) 16 (-) >0.05
rs3902968 chr1:205639045 SLC45A3 C - 13 A vs. G 0.342 (G) 0.267 (A) >1 (-) 0 (-) >0.05
rs36059081 chr1:205624985 SLC45A3 [-1994bp] C - 13 C vs. G 0.033 (G) 0.325 (G) >1 (-) 0 (-) >0.05
rs12036666 chr1:205618659 SLC45A3 [-8320bp] C - 13 A vs. G - 0.25 (A) <1 (-) 0 (-) >0.05
rs4951251 chr1:205617852 SLC45A3 [-9127bp] C - 13 T vs. C 0.033 (T) 0.325 (T) <1 (-) 0 (-) >0.05
rs12744379 chr1:205612080 ELK4 [+10990bp] C - 13 T vs. G 0.033 (G) 0.325 (G) >1 (-) 0 (-) >0.05
rs11580704 chr1:205606982 ELK4 [+5892bp] C - 13 T vs. G 0.333 (T) - >1 (-) 11 (-) >0.05
rs1172199 chr1:205658939 SLC45A3 [+9352bp] C - 13 T vs. C 0.117 (C) 0.417 (T) <1 (-) 31 (-) >0.05
rs11590243 chr1:205586249 ELK4 C - 10 C vs. G 0.058 (C) - >1 (-) 0 (-) >0.05
rs13757 chr1:205601199 ELK4 [+109bp] C - 13 A vs. G 0.342 (A) - >1 (-) 0 (-) >0.05
rs145880670 chr1:205632610 SLC45A3 C - 9 T vs. G - - <1 (-) 0 (-) >0.05
rs76744374 chr1:205624756 SLC45A3 [-2223bp] C - 13 A vs. G 0.158 (A) - <1 (-) 10 (-) >0.05
rs1114126 chr1:205606172 ELK4 [+5082bp] C - 13 A vs. G 0.158 (G) 0.467 (G) >1 (-) 0 (-) >0.05
rs12039255 chr1:205609010 ELK4 [+7920bp] C - 13 T vs. C 0.033 (T) 0.325 (T) <1 (-) 0 (-) >0.05
rs60890169 chr1:205612646 ELK4 [+11556bp] C - 13 T vs. C 0.325 (T) - >1 (-) 6 (-) >0.05
rs111519240 chr1:205620884 SLC45A3 [-6095bp] C - 13 A vs. G - - <1 (-) 15 (-) >0.05

Association studies for this region [+]