SLC45A3, chr1:205626979-205649587 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs3747973 chr1:205677148 NUCKS1 [-4799bp] All: C 108,990 15 A vs. G 0.383 (A) 0.35 (G) 0.89 (0.86-0.92) 38 (0-66) 1.69e-12
Meta_image?name=rs3747973

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs11240547 chr1:205632932 SLC45A3 C - 13 A vs. G 0.325 (A) 0.392 (G) <1 (-) 0 (-) >0.05
rs12752037 chr1:205661614 SLC45A3 [+12027bp] C - 13 A vs. C 0.125 (C) 0.433 (A) <1 (-) 49 (-) >0.05
rs144414741 chr1:205585863 ELK4 C - 6 T vs. C - - <1 (-) 43 (-) >0.05
rs41304251 chr1:205631522 SLC45A3 C - 13 T vs. C - - >1 (-) 33 (-) >0.05
rs2867891 chr1:205598979 ELK4 C - 13 A vs. G 0.1 (A) 0.033 (A) <1 (-) 0 (-) >0.05
rs144171663 chr1:205616555 SLC45A3 [-10424bp] C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs3789461 chr1:205588637 ELK4 C - 13 T vs. C 0.058 (T) 0.358 (T) <1 (-) 18 (-) >0.05
rs143746483 chr1:205684175 NUCKS1 C - 9 C vs. G - - <1 (-) 0 (-) >0.05
rs2153902 chr1:205616763 SLC45A3 [-10216bp] C - 12 T vs. G 0.333 (T) 0.267 (T) >1 (-) 0 (-) >0.05
rs1418652 chr1:205646458 SLC45A3 C - 13 T vs. C 0.35 (C) 0.192 (T) >1 (-) 0 (-) >0.05
rs77146670 chr1:205686004 NUCKS1 C - 12 C vs. G 0.058 (G) - >1 (-) 0 (-) >0.05
rs6593963 chr1:205641018 SLC45A3 C - 4 A vs. G 0.0 (G) - >1 (-) 0 (-) >0.05
rs112754568 chr1:205622385 SLC45A3 [-4594bp] C - 12 T vs. C 0.025 (T) 0.025 (T) >1 (-) 0 (-) >0.05
rs113807012 chr1:205622381 SLC45A3 [-4598bp] C - 12 A vs. T - 0.017 (A) >1 (-) 0 (-) >0.05
rs76935849 chr1:205621684 SLC45A3 [-5295bp] C - 12 T vs. C - 0.017 (T) >1 (-) 0 (-) >0.05
rs151045305 chr1:205626548 SLC45A3 [-431bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs79637404 chr1:205618730 SLC45A3 [-8249bp] C - 12 A vs. G - 0.025 (G) <1 (-) 0 (-) >0.05
rs140085354 chr1:205648550 SLC45A3 C - 3 T vs. G - - <1 (-) 0 (-) >0.05
rs6593961 chr1:205619544 SLC45A3 [-7435bp] C - 12 T vs. G 0.033 (T) - >1 (-) 0 (-) >0.05
rs113418196 chr1:205620585 SLC45A3 [-6394bp] C - 12 A vs. C 0.033 (A) - >1 (-) 0 (-) >0.05
rs1418653 chr1:205646278 SLC45A3 C - 13 A vs. C 0.425 (C) 0.175 (A) >1 (-) 0 (-) >0.05
rs112871603 chr1:205620494 SLC45A3 [-6485bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs115812113 chr1:205668532 NUCKS1 [-13415bp] C - 13 T vs. G - - <1 (-) 0 (-) >0.05
rs150111028 chr1:205685106 NUCKS1 C - 3 A vs. G - - >1 (-) 0 (-) >0.05
rs58785399 chr1:205665313 SLC45A3 [+15726bp] C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs114269266 chr1:205618596 SLC45A3 [-8383bp] C - 12 T vs. C 0.025 (T) - >1 (-) 0 (-) >0.05
rs116370807 chr1:205665084 SLC45A3 [+15497bp] C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs59081879 chr1:205665443 SLC45A3 [+15856bp] C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs76968726 chr1:205666117 NUCKS1 [-15830bp] C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs79837567 chr1:205666118 NUCKS1 [-15829bp] C - 13 A vs. C - - >1 (-) 0 (-) >0.05
rs149513069 chr1:205603424 ELK4 [+2334bp] C - 13 T vs. C - - <1 (-) 62 (-) >0.05
rs114794039 chr1:205674637 NUCKS1 [-7310bp] C - 12 A vs. G 0.042 (A) - <1 (-) 0 (-) >0.05
rs143951662 chr1:205682405 NUCKS1 C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs75555091 chr1:205606054 ELK4 [+4964bp] C - 13 A vs. G 0.033 (A) - >1 (-) 0 (-) >0.05
rs149020683 chr1:205698390 NUCKS1 C - 13 A vs. C - - >1 (-) 38 (-) >0.05
rs142923181 chr1:205598735 ELK4 C - 9 T vs. C - - >1 (-) 0 (-) >0.05
rs2793374 chr1:205647508 SLC45A3 C - 13 T vs. C 0.425 (C) 0.192 (T) >1 (-) 0 (-) >0.05
rs1772139 chr1:205647155 SLC45A3 C - 13 T vs. G 0.425 (T) 0.183 (G) <1 (-) 0 (-) >0.05
rs4369284 chr1:205605543 ELK4 [+4453bp] C - 13 A vs. G - - <1 (-) 59 (-) >0.05
rs145760548 chr1:205627890 SLC45A3 C - 11 C vs. G - - <1 (-) 11 (-) >0.05
rs12135005 chr1:205668558 NUCKS1 [-13389bp] C - 12 T vs. C - - >1 (-) 9 (-) >0.05
rs74687252 chr1:205692574 NUCKS1 C - 13 T vs. C 0.017 (T) - <1 (-) 38 (-) >0.05
rs114654961 chr1:205662674 SLC45A3 [+13087bp] C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs116180003 chr1:205606706 ELK4 [+5616bp] C - 13 T vs. G 0.033 (G) - <1 (-) 0 (-) >0.05
rs7528324 chr1:205619184 SLC45A3 [-7795bp] C - 10 A vs. C 0.033 (A) - >1 (-) 0 (-) >0.05
rs77244682 chr1:205607153 ELK4 [+6063bp] C - 12 A vs. G 0.033 (A) 0.017 (A) >1 (-) 0 (-) >0.05
rs117187161 chr1:205660087 SLC45A3 [+10500bp] C - 11 A vs. G - 0.042 (G) <1 (-) 0 (-) >0.05
rs147681886 chr1:205667341 NUCKS1 [-14606bp] C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs111386762 chr1:205607954 ELK4 [+6864bp] C - 12 A vs. C - - >1 (-) 0 (-) >0.05
rs148474502 chr1:205665725 SLC45A3 [+16138bp] C - 5 T vs. C - - <1 (-) 0 (-) >0.05

Association studies for this region [+]