SLC45A3, chr1:205626979-205649587 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs3747973 chr1:205677148 NUCKS1 [-4799bp] All: C 108,990 15 A vs. G 0.383 (A) 0.35 (G) 0.89 (0.86-0.92) 38 (0-66) 1.69e-12
Meta_image?name=rs3747973

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs10793741 chr1:205608984 ELK4 [+7894bp] C - 13 A vs. G 0.333 (G) 0.283 (G) <1 (-) 5 (-) >0.05
rs113947322 chr1:205607769 ELK4 [+6679bp] C - 13 A vs. G 0.033 (G) - <1 (-) 0 (-) >0.05
rs78202794 chr1:205599921 ELK4 C - 13 T vs. C 0.033 (T) 0.25 (T) <1 (-) 59 (-) >0.05
rs112358150 chr1:205603404 ELK4 [+2314bp] C - 13 C vs. G - - >1 (-) 58 (-) >0.05
rs74853500 chr1:205631577 SLC45A3 C - 8 T vs. C 0.008 (T) - >1 (-) 0 (-) >0.05
rs58838397 chr1:205661405 SLC45A3 [+11818bp] C - 13 A vs. G 0.092 (A) - <1 (-) 25 (-) >0.05
rs12406407 chr1:205613234 ELK4 [+12144bp] C - 13 C vs. G 0.333 (C) - >1 (-) 9 (-) >0.05
rs7549710 chr1:205601189 ELK4 [+99bp] C - 13 T vs. C 0.067 (T) 0.342 (T) <1 (-) 58 (-) >0.05
rs116783335 chr1:205641115 SLC45A3 C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs113551063 chr1:205587849 ELK4 C - 13 A vs. G - - <1 (-) 59 (-) >0.05
rs142783959 chr1:205647309 SLC45A3 C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs78590176 chr1:205645340 SLC45A3 C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs116426872 chr1:205585067 ELK4 C - 12 T vs. C 0.025 (T) - >1 (-) 0 (-) >0.05
rs6688760 chr1:205581521 ELK4 C - 13 A vs. G 0.033 (A) 0.317 (A) <1 (-) 58 (-) >0.05
rs12409639 chr1:205638222 SLC45A3 C - 13 A vs. G 0.008 (A) 0.142 (A) <1 (-) 0 (-) >0.05
rs74231753 chr1:205582251 ELK4 C - 13 A vs. G 0.033 (A) 0.317 (A) <1 (-) 58 (-) >0.05
rs16856135 chr1:205637966 SLC45A3 C - 13 T vs. C - 0.142 (T) <1 (-) 0 (-) >0.05
rs6677586 chr1:205581376 ELK4 C - 13 A vs. G 0.033 (G) 0.308 (G) >1 (-) 59 (-) >0.05
rs16856186 chr1:205678126 NUCKS1 [-3821bp] C - 13 T vs. G 0.067 (G) - >1 (-) 0 (-) >0.05
rs17347980 chr1:205679213 NUCKS1 [-2734bp] C - 13 T vs. C 0.05 (T) - <1 (-) 0 (-) >0.05
rs16856139 chr1:205638464 SLC45A3 C - 13 T vs. C 0.017 (T) 0.142 (T) <1 (-) 0 (-) >0.05
rs11805457 chr1:205619598 SLC45A3 [-7381bp] C - 13 T vs. C 0.333 (C) 0.233 (C) <1 (-) 7 (-) >0.05
rs4951249 chr1:205615594 SLC45A3 [-11385bp] C - 13 T vs. C 0.4 (C) 0.317 (T) <1 (-) 0 (-) >0.05
rs147131526 chr1:205598674 ELK4 C - 12 A vs. G - - >1 (-) 19 (-) >0.05
rs140299092 chr1:205584398 ELK4 C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs137883659 chr1:205634100 SLC45A3 C - 3 A vs. C - - <1 (-) 38 (-) >0.05
rs150020096 chr1:205630564 SLC45A3 C - 9 T vs. C - - >1 (-) 0 (-) >0.05
rs10900519 chr1:205618564 SLC45A3 [-8415bp] C - 13 A vs. C 0.333 (C) 0.292 (C) <1 (-) 5 (-) >0.05
rs2153903 chr1:205616849 SLC45A3 [-10130bp] C - 13 A vs. G 0.333 (A) 0.283 (A) >1 (-) 8 (-) >0.05
rs140222727 chr1:205638653 SLC45A3 C - 12 T vs. C - - >1 (-) 2 (-) >0.05
rs138085495 chr1:205650934 SLC45A3 [+1347bp] C - 10 T vs. C - - <1 (-) 0 (-) >0.05
rs12565987 chr1:205627886 SLC45A3 C - 13 A vs. T 0.083 (T) - <1 (-) 24 (-) >0.05
rs149515685 chr1:205686265 NUCKS1 C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs823104 chr1:205657891 SLC45A3 [+8304bp] C - 13 T vs. C 0.067 (T) 0.0 (T) >1 (-) 0 (-) >0.05
rs115716259 chr1:205629736 SLC45A3 C - 11 A vs. T 0.017 (T) - >1 (-) 0 (-) >0.05
rs17347710 chr1:205609410 ELK4 [+8320bp] C - 13 A vs. G 0.1 (G) 0.025 (G) >1 (-) 14 (-) >0.05
rs12126801 chr1:205616154 SLC45A3 [-10825bp] C - 13 T vs. C 0.1 (C) 0.033 (C) >1 (-) 19 (-) >0.05
rs12128988 chr1:205612463 ELK4 [+11373bp] C - 13 T vs. G 0.1 (G) 0.025 (G) >1 (-) 16 (-) >0.05
rs72750914 chr1:205602272 ELK4 [+1182bp] C - 9 T vs. C 0.008 (C) - <1 (-) 0 (-) >0.05
rs139159097 chr1:205582929 ELK4 C - 9 A vs. G - - >1 (-) 0 (-) >0.05
rs73078376 chr1:205639611 SLC45A3 C - 13 A vs. C 0.025 (A) - <1 (-) 0 (-) >0.05
rs11240550 chr1:205640816 SLC45A3 C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs115534843 chr1:205691204 NUCKS1 C - 13 A vs. C - - >1 (-) 7 (-) >0.05
rs114272944 chr1:205655551 SLC45A3 [+5964bp] C - 8 T vs. C 0.042 (T) - <1 (-) 4 (-) >0.05
rs116107919 chr1:205680881 NUCKS1 [-1066bp] C - 13 A vs. G 0.025 (A) - <1 (-) 0 (-) >0.05
rs139485123 chr1:205587024 ELK4 C - 10 A vs. C - - <1 (-) 0 (-) >0.05
rs111299170 chr1:205674897 NUCKS1 [-7050bp] C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs12125386 chr1:205606830 ELK4 [+5740bp] C - 13 A vs. G 0.1 (A) - <1 (-) 18 (-) >0.05
rs55858232 chr1:205663213 SLC45A3 [+13626bp] C - 13 T vs. C 0.067 (C) - <1 (-) 0 (-) >0.05
rs12140238 chr1:205637120 SLC45A3 C - 13 A vs. G 0.033 (A) - <1 (-) 21 (-) >0.05

Association studies for this region [+]