SMC6, chr2:17845079-17981509 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9268996 chr2:17874650 SMC6 All: C 45,262 5 C vs. T - - 1.14 (1.06-1.23) 0 (-) 4.85e-04
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9268996 chr2:17874650 SMC6 All: C 45,262 5 C vs. T - - 1.14 (1.06-1.23) 0 (-) 4.85e-04
rs13025588 chr2:17999184 MSGN1 [+816bp] C - 13 A vs. G 0.05 (A) - <1 (-) 0 (-) <0.05
rs57499956 chr2:17873009 SMC6 C - 4 T vs. C - - >1 (-) 2 (-) <0.05
rs7564712 chr2:18005651 MSGN1 [+7283bp] C - 13 A vs. T 0.142 (A) - >1 (-) 39 (-) <0.05
rs16983978 chr2:18031386 KCNS3 [-27728bp] C - 13 T vs. C 0.083 (T) - >1 (-) 15 (-) <0.05
rs16983965 chr2:18029944 KCNS3 [-29170bp] C - 13 T vs. C 0.083 (T) - >1 (-) 15 (-) <0.05
rs7592567 chr2:18008568 MSGN1 [+10200bp] C - 13 T vs. C 0.083 (T) - >1 (-) 0 (-) <0.05
rs73918959 chr2:18023254 MSGN1 [+24886bp] C - 13 A vs. G 0.075 (G) - <1 (-) 11 (-) <0.05
rs73220856 chr2:18030373 KCNS3 [-28741bp] C - 13 T vs. G 0.083 (G) - <1 (-) 0 (-) <0.05
rs73918952 chr2:18015731 MSGN1 [+17363bp] C - 13 T vs. G 0.083 (T) - >1 (-) 0 (-) <0.05
rs11096490 chr2:18027849 MSGN1 [+29481bp] C - 13 A vs. G 0.083 (G) - <1 (-) 16 (-) <0.05
rs9306860 chr2:18010129 MSGN1 [+11761bp] C - 13 A vs. G 0.083 (G) - <1 (-) 0 (-) <0.05
rs73220829 chr2:18015776 MSGN1 [+17408bp] C - 13 T vs. C 0.083 (C) - <1 (-) 0 (-) <0.05
rs11904063 chr2:18027911 MSGN1 [+29543bp] C - 13 A vs. T 0.083 (A) - >1 (-) 11 (-) <0.05
rs6708674 chr2:18004109 MSGN1 [+5741bp] C - 13 T vs. C 0.467 (T) 0.008 (C) >1 (-) 0 (-) <0.05
rs11096489 chr2:18027520 MSGN1 [+29152bp] C - 13 A vs. C 0.083 (C) - <1 (-) 0 (-) <0.05
rs143865445 chr2:17867351 SMC6 C - 12 A vs. G - - <1 (-) 0 (-) <0.05
rs6717850 chr2:18006787 MSGN1 [+8419bp] C - 13 T vs. C 0.075 (C) - <1 (-) 0 (-) <0.05
rs80094908 chr2:18008143 MSGN1 [+9775bp] C - 13 T vs. G 0.083 (G) - <1 (-) 0 (-) <0.05
rs148048130 chr2:17834903 VSNL1 C - 13 T vs. C - - >1 (-) 0 (-) <0.05
rs11680635 chr2:18017976 MSGN1 [+19608bp] C - 13 T vs. C 0.083 (C) - <1 (-) 0 (-) <0.05
rs11686466 chr2:18017631 MSGN1 [+19263bp] C - 13 A vs. G 0.083 (G) - <1 (-) 0 (-) <0.05
rs11902960 chr2:18027909 MSGN1 [+29541bp] C - 13 A vs. G 0.083 (G) - <1 (-) 0 (-) <0.05
rs13401767 chr2:18006007 MSGN1 [+7639bp] C - 13 C vs. G 0.383 (C) 0.058 (C) >1 (-) 24 (-) <0.05
rs73220823 chr2:18011776 MSGN1 [+13408bp] C - 13 T vs. G 0.075 (T) - >1 (-) 0 (-) <0.05
rs11903197 chr2:18024663 MSGN1 [+26295bp] C - 13 T vs. G 0.083 (T) - >1 (-) 5 (-) <0.05
rs116651248 chr2:17797477 VSNL1 C - 13 T vs. C 0.017 (T) - >1 (-) 0 (-) <0.05
rs73220836 chr2:18020887 MSGN1 [+22519bp] C - 13 T vs. C 0.075 (T) - >1 (-) 0 (-) <0.05
rs6745843 chr2:17873391 SMC6 C - 13 T vs. C - - >1 (-) 23 (-) <0.05
rs300167 chr2:17961050 SMC6 C - 13 A vs. G - - >1 (-) 0 (-) <0.05
rs140685281 chr2:17878953 SMC6 C - 12 A vs. G - - >1 (-) 0 (-) <0.05
rs300169 chr2:17962518 SMC6 C - 12 T vs. C 0.383 (C) 0.0 (C) <1 (-) 0 (-) <0.05
rs12988614 chr2:18004263 MSGN1 [+5895bp] C - 13 A vs. G 0.433 (A) - >1 (-) 0 (-) <0.05
rs12477585 chr2:18002459 MSGN1 [+4091bp] C - 13 A vs. G 0.433 (A) - >1 (-) 0 (-) <0.05
rs7569030 chr2:17921036 SMC6 C - 13 A vs. C 0.375 (A) - >1 (-) 0 (-) <0.05
rs6731131 chr2:17894461 SMC6 C - 13 T vs. C 0.308 (T) - >1 (-) 0 (-) <0.05
rs2555071 chr2:17941917 SMC6 C - 13 A vs. G - - >1 (-) 0 (-) <0.05
rs2615050 chr2:17972397 SMC6 C - 13 T vs. C 0.375 (T) 0.0 (T) >1 (-) 0 (-) <0.05
rs11679582 chr2:17916382 SMC6 C - 13 C vs. G 0.375 (G) - <1 (-) 0 (-) <0.05
rs61126185 chr2:17817332 VSNL1 C - 5 C vs. G - 0.033 (G) >1 (-) 0 (-) <0.05
rs2615047 chr2:17943015 SMC6 C - 13 T vs. C 0.383 (T) 0.0 (T) >1 (-) 0 (-) <0.05
rs300172 chr2:17966421 SMC6 C - 13 T vs. G 0.383 (T) - >1 (-) 0 (-) <0.05
rs300171 chr2:17966157 SMC6 C - 13 A vs. G 0.392 (A) 0.0 (A) >1 (-) 0 (-) <0.05
rs300174 chr2:17953560 SMC6 C - 13 T vs. C 0.383 (C) 0.0 (C) <1 (-) 0 (-) <0.05
rs1812152 chr2:17942775 SMC6 C - 13 A vs. T 0.383 (T) - <1 (-) 0 (-) <0.05
rs6531055 chr2:17958261 SMC6 C - 13 T vs. C 0.383 (T) 0.0 (T) >1 (-) 0 (-) <0.05
rs300180 chr2:17970505 SMC6 C - 13 A vs. G 0.392 (G) 0.0 (G) <1 (-) 0 (-) <0.05
rs300177 chr2:17954421 SMC6 C - 13 C vs. G 0.383 (C) - >1 (-) 0 (-) <0.05
rs76938786 chr2:18014474 MSGN1 [+16106bp] C - 13 C vs. G 0.083 (G) - <1 (-) 0 (-) <0.05
rs300176 chr2:17954140 SMC6 C - 13 A vs. G 0.383 (A) 0.0 (A) >1 (-) 0 (-) <0.05

Association studies for this region [+]