TAP2, chr6:32789610-32806557 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9276627 chr6:32743835 HLA-DQB2 [+12524bp] All: C 103,235 14 C vs. T - - 1.16 (1.09-1.23) 3 (0-56) 4.81e-06
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs117871380 chr6:32841253 PSMB9 [+13891bp] C - 10 T vs. C - 0.108 (T) <1 (-) 0 (-) >0.05
rs56173814 chr6:32797974 TAP2 C - 9 T vs. C 0.008 (T) - <1 (-) 18 (-) >0.05
rs141274380 chr6:32776136 HLA-DOB [-4404bp] C - 8 T vs. C - - <1 (-) 0 (-) >0.05
rs2621396 chr6:32752913 HLA-DQB2 [+21602bp] C - 12 A vs. T 0.283 (T) 0.383 (T) <1 (-) 1 (-) >0.05
rs1135216 chr6:32814975 PSMB9 C - 12 T vs. C 0.1 (C) 0.175 (C) <1 (-) 0 (-) >0.05
rs4959118 chr6:32845672 PSMB9 [+18310bp] C - 10 T vs. G - 0.092 (T) <1 (-) 0 (-) >0.05
rs28986407 chr6:32755034 HLA-DQB2 [+23723bp] C - 12 A vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs28986408 chr6:32755043 HLA-DQB2 [+23732bp] C - 12 T vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs28986330 chr6:32743642 HLA-DQB2 [+12331bp] C - 12 T vs. C 0.092 (T) - >1 (-) 0 (-) >0.05
rs2227020 chr6:32770133 HLA-DOB [-10407bp] C - 12 T vs. G 0.058 (G) - >1 (-) 0 (-) >0.05
chr6:32745539 chr6:32745539 HLA-DQB2 [+14228bp] C - 4 A vs. G - - <1 (-) 0 (-) >0.05
rs28986365 chr6:32751746 HLA-DQB2 [+20435bp] C - 12 T vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs28986366 chr6:32751751 HLA-DQB2 [+20440bp] C - 12 A vs. G 0.092 (A) - >1 (-) 0 (-) >0.05
rs12663317 chr6:32742827 HLA-DQB2 [+11516bp] C - 12 A vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs28986364 chr6:32751691 HLA-DQB2 [+20380bp] C - 12 A vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs78333291 chr6:32754933 HLA-DQB2 [+23622bp] C - 8 A vs. G - - >1 (-) 0 (-) >0.05
rs2621414 chr6:32742059 HLA-DQB2 [+10748bp] C - 11 T vs. C 0.35 (T) 0.233 (T) <1 (-) 12 (-) >0.05
rs117440438 chr6:32752120 HLA-DQB2 [+20809bp] C - 5 T vs. C - 0.05 (T) >1 (-) 0 (-) >0.05
rs16870918 chr6:32792162 TAP2 C - 12 T vs. G 0.017 (G) - <1 (-) 0 (-) >0.05
rs80108580 chr6:32763128 HLA-DOB [-17412bp] C - 8 A vs. G - - <1 (-) 0 (-) >0.05
rs9986640 chr6:32764970 HLA-DOB [-15570bp] C - 8 A vs. G - 0.017 (A) >1 (-) 0 (-) >0.05
rs9296045 chr6:32766405 HLA-DOB [-14135bp] C - 8 A vs. G - 0.017 (A) >1 (-) 0 (-) >0.05
rs241426 chr6:32804553 TAP2 C - 12 A vs. T 0.375 (T) 0.425 (T) <1 (-) 0 (-) >0.05
rs9501213 chr6:32760383 HLA-DOB [-20157bp] C - 8 A vs. T - - <1 (-) 0 (-) >0.05
rs59145501 chr6:32791831 TAP2 C - 12 T vs. C 0.017 (C) - <1 (-) 0 (-) >0.05
rs9501212 chr6:32760006 HLA-DOB [-20534bp] C - 8 A vs. G - - <1 (-) 0 (-) >0.05
rs77399462 chr6:32757870 HLA-DOB [-22670bp] C - 8 T vs. C - - >1 (-) 0 (-) >0.05
rs28986340 chr6:32748924 HLA-DQB2 [+17613bp] C - 12 C vs. G 0.092 (C) - >1 (-) 0 (-) >0.05
rs144390407 chr6:32849061 PSMB9 [+21699bp] C - 12 A vs. G - - >1 (-) 37 (-) >0.05
rs3819717 chr6:32804299 TAP2 C - 12 T vs. C 0.417 (C) 0.45 (T) <1 (-) 0 (-) >0.05
rs73738924 chr6:32794586 TAP2 C - 9 A vs. G - - <1 (-) 4 (-) >0.05
rs28986406 chr6:32755024 HLA-DQB2 [+23713bp] C - 12 A vs. G 0.092 (A) - >1 (-) 0 (-) >0.05
rs73738925 chr6:32794774 TAP2 C - 9 A vs. G - - >1 (-) 4 (-) >0.05
chr6:32745443 chr6:32745443 HLA-DQB2 [+14132bp] C - 5 A vs. G - - <1 (-) 0 (-) >0.05
rs114349466 chr6:32754326 HLA-DQB2 [+23015bp] C - 8 T vs. G - - <1 (-) 0 (-) >0.05
rs241443 chr6:32797115 TAP2 C - 12 T vs. G 0.383 (G) 0.408 (G) <1 (-) 0 (-) >0.05
rs13215244 chr6:32753053 HLA-DQB2 [+21742bp] C - 12 A vs. G 0.092 (A) - >1 (-) 0 (-) >0.05
rs59654450 chr6:32815982 PSMB9 C - 11 T vs. C 0.025 (C) - >1 (-) 18 (-) >0.05
rs117914977 chr6:32783328 HLA-DOB C - 9 T vs. C - 0.083 (T) <1 (-) 0 (-) >0.05
rs12660504 chr6:32743138 HLA-DQB2 [+11827bp] C - 12 A vs. G 0.092 (A) - >1 (-) 0 (-) >0.05
rs17213763 chr6:32794799 TAP2 C - 9 A vs. C - - <1 (-) 3 (-) >0.05
rs2621412 chr6:32743000 HLA-DQB2 [+11689bp] C - 12 A vs. C 0.4 (C) 0.442 (C) <1 (-) 0 (-) >0.05
rs148947703 chr6:32816049 PSMB9 C - 12 A vs. G - - >1 (-) 40 (-) >0.05
rs28986328 chr6:32741002 HLA-DQB2 [+9691bp] C - 12 T vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs35520662 chr6:32748029 HLA-DQB2 [+16718bp] C - 12 T vs. G 0.05 (G) - >1 (-) 18 (-) >0.05
rs28986410 chr6:32755087 HLA-DQB2 [+23776bp] C - 12 T vs. C 0.083 (C) 0.008 (C) <1 (-) 0 (-) >0.05
rs17501267 chr6:32782149 HLA-DOB C - 12 A vs. G 0.033 (A) 0.042 (A) <1 (-) 0 (-) >0.05
rs17213770 chr6:32794830 TAP2 C - 9 C vs. G - - <1 (-) 3 (-) >0.05
rs7742085 chr6:32746178 HLA-DQB2 [+14867bp] C - 12 T vs. G - - >1 (-) 0 (-) >0.05
rs58781120 chr6:32815930 PSMB9 C - 12 T vs. C 0.017 (C) - <1 (-) 27 (-) >0.05

Association studies for this region [+]