TAP2, chr6:32789610-32806557 +/- 50000 base pairs
View on:

Most significant meta-analysis in this region
Append your own data and create meta-analysis

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9276627 chr6:32743835 HLA-DQB2 [+12524bp] All: C 103,235 14 C vs. T - - 1.16 (1.09-1.23) 3 (0-56) 4.81e-06
Meta_image?name=rs9276627

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs61627691 chr6:32815943 PSMB9 C - 12 T vs. C 0.025 (C) - <1 (-) 27 (-) >0.05
rs139428905 chr6:32773046 HLA-DOB [-7494bp] C - 4 A vs. G - - <1 (-) 0 (-) >0.05
rs17501287 chr6:32783450 HLA-DOB C - 12 C vs. G 0.033 (G) 0.058 (G) >1 (-) 0 (-) >0.05
rs115086750 chr6:32771396 HLA-DOB [-9144bp] C - 8 T vs. C - - <1 (-) 0 (-) >0.05
rs76440421 chr6:32783406 HLA-DOB C - 12 A vs. G 0.033 (A) - <1 (-) 0 (-) >0.05
rs28986377 chr6:32752222 HLA-DQB2 [+20911bp] C - 12 T vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs60601161 chr6:32783387 HLA-DOB C - 11 T vs. C 0.017 (T) 0.083 (T) >1 (-) 0 (-) >0.05
rs17220171 chr6:32794907 TAP2 C - 9 A vs. G - - <1 (-) 3 (-) >0.05
rs1044043 chr6:32793981 TAP2 C - 12 A vs. C 0.242 (A) 0.2 (A) >1 (-) 41 (-) >0.05
rs2857112 chr6:32780294 HLA-DOB [-246bp] C - 12 A vs. T 0.058 (A) - <1 (-) 0 (-) >0.05
rs114140237 chr6:32773748 HLA-DOB [-6792bp] C - 8 A vs. C - - >1 (-) 0 (-) >0.05
rs17220178 chr6:32794947 TAP2 C - 9 C vs. G - - <1 (-) 3 (-) >0.05
rs2857208 chr6:32743103 HLA-DQB2 [+11792bp] C - 12 T vs. C 0.083 (C) - >1 (-) 0 (-) >0.05
rs2621330 chr6:32781524 HLA-DOB C - 12 T vs. C 0.058 (T) - <1 (-) 0 (-) >0.05
rs35921062 chr6:32774416 HLA-DOB [-6124bp] C - 12 T vs. C 0.042 (T) - <1 (-) 20 (-) >0.05
rs4148874 chr6:32797488 TAP2 C - 12 T vs. C 0.3 (C) 0.167 (C) <1 (-) 23 (-) >0.05
rs75797445 chr6:32747073 HLA-DQB2 [+15762bp] C - 6 T vs. C - - <1 (-) 28 (-) >0.05
rs2857105 chr6:32790059 TAP2 C - 12 T vs. C 0.058 (C) - >1 (-) 0 (-) >0.05
rs28986374 chr6:32752199 HLA-DQB2 [+20888bp] C - 12 A vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs28893532 chr6:32747817 HLA-DQB2 [+16506bp] C - 12 T vs. C 0.092 (T) - >1 (-) 0 (-) >0.05
rs76545695 chr6:32817293 PSMB9 C - 12 T vs. C - - >1 (-) 10 (-) >0.05
rs2071467 chr6:32805306 TAP2 C - 12 T vs. C 0.025 (T) 0.125 (T) >1 (-) 22 (-) >0.05
rs28893533 chr6:32747827 HLA-DQB2 [+16516bp] C - 12 T vs. G 0.083 (T) - >1 (-) 0 (-) >0.05
rs2071537 chr6:32818991 PSMB9 C - 9 A vs. C - 0.1 (A) <1 (-) 0 (-) >0.05
rs117733615 chr6:32819642 PSMB9 C - 9 T vs. C - 0.092 (T) <1 (-) 0 (-) >0.05
rs28986391 chr6:32754294 HLA-DQB2 [+22983bp] C - 12 T vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs2857209 chr6:32741918 HLA-DQB2 [+10607bp] C - 12 A vs. G 0.392 (A) 0.442 (A) >1 (-) 0 (-) >0.05
rs78184001 chr6:32792616 TAP2 C - 12 T vs. C 0.017 (T) - >1 (-) 0 (-) >0.05
rs115979309 chr6:32750575 HLA-DQB2 [+19264bp] C - 8 T vs. C - - <1 (-) 0 (-) >0.05
rs9500908 chr6:32770666 HLA-DOB [-9874bp] C - 8 A vs. C - - >1 (-) 0 (-) >0.05
rs9501209 chr6:32746518 HLA-DQB2 [+15207bp] C - 10 A vs. G - - >1 (-) 0 (-) >0.05
rs28724892 chr6:32743488 HLA-DQB2 [+12177bp] C - 12 A vs. G - 0.425 (A) >1 (-) 0 (-) >0.05
rs17213735 chr6:32787308 TAP2 [-2302bp] C - 12 T vs. G 0.033 (T) 0.042 (T) <1 (-) 0 (-) >0.05
rs17213742 chr6:32787310 TAP2 [-2300bp] C - 12 A vs. G 0.033 (A) 0.042 (A) <1 (-) 0 (-) >0.05
rs17220136 chr6:32787337 TAP2 [-2273bp] C - 12 T vs. C 0.033 (T) 0.042 (T) <1 (-) 0 (-) >0.05
rs9501214 chr6:32771929 HLA-DOB [-8611bp] C - 8 A vs. T - - <1 (-) 0 (-) >0.05
rs2263320 chr6:32745936 HLA-DQB2 [+14625bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs41316241 chr6:32782795 HLA-DOB C - 12 A vs. C 0.05 (A) - <1 (-) 18 (-) >0.05
rs2857204 chr6:32744347 HLA-DQB2 [+13036bp] C - 12 T vs. G 0.383 (T) 0.45 (T) >1 (-) 0 (-) >0.05
rs41258084 chr6:32780957 HLA-DOB C - 12 T vs. C 0.05 (T) - <1 (-) 18 (-) >0.05
rs28986409 chr6:32755053 HLA-DQB2 [+23742bp] C - 12 A vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs2127679 chr6:32818236 PSMB9 C - 12 A vs. G 0.025 (A) 0.017 (A) >1 (-) 33 (-) >0.05
rs28986387 chr6:32753149 HLA-DQB2 [+21838bp] C - 12 T vs. C 0.092 (T) - >1 (-) 0 (-) >0.05
rs28986388 chr6:32753150 HLA-DQB2 [+21839bp] C - 12 A vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs35393932 chr6:32778882 HLA-DOB [-1658bp] C - 6 T vs. C - - >1 (-) 35 (-) >0.05
rs35447526 chr6:32778858 HLA-DOB [-1682bp] C - 6 A vs. G - - <1 (-) 35 (-) >0.05
rs9469283 chr6:32813756 PSMB9 C - 12 A vs. G 0.042 (A) - >1 (-) 34 (-) >0.05
rs34474161 chr6:32778818 HLA-DOB [-1722bp] C - 5 T vs. C - - <1 (-) 47 (-) >0.05
rs73412964 chr6:32838528 PSMB9 [+11166bp] C - 12 T vs. C 0.017 (T) - >1 (-) 19 (-) >0.05
rs59265446 chr6:32839305 PSMB9 [+11943bp] C - 12 A vs. G - - >1 (-) 19 (-) >0.05

Association studies for this region [+]