TAP2, chr6:32789610-32806557 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9276627 chr6:32743835 HLA-DQB2 [+12524bp] All: C 103,235 14 C vs. T - - 1.16 (1.09-1.23) 3 (0-56) 4.81e-06
Meta_image?name=rs9276627

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2070121 chr6:32781554 HLA-DOB C - 11 A vs. G 0.05 (A) 0.033 (A) >1 (-) 0 (-) >0.05
rs10046257 chr6:32854697 PSMB9 [+27335bp] C - 12 A vs. G 0.075 (A) 0.167 (A) >1 (-) 0 (-) >0.05
rs9276857 chr6:32841319 PSMB9 [+13957bp] C - 12 T vs. C 0.275 (C) 0.275 (C) <1 (-) 0 (-) >0.05
rs9276858 chr6:32841330 PSMB9 [+13968bp] C - 12 A vs. C 0.258 (A) 0.275 (A) >1 (-) 0 (-) >0.05
rs56376659 chr6:32821868 PSMB9 C - 12 A vs. C 0.017 (A) - <1 (-) 29 (-) >0.05
rs28986415 chr6:32755465 HLA-DQB2 [+24154bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs28986414 chr6:32755460 HLA-DQB2 [+24149bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs112519350 chr6:32854052 PSMB9 [+26690bp] C - 12 T vs. C 0.075 (C) 0.183 (C) <1 (-) 0 (-) >0.05
rs12529313 chr6:32817130 PSMB9 C - 11 A vs. G 0.117 (G) 0.192 (G) <1 (-) 0 (-) >0.05
rs28986368 chr6:32751942 HLA-DQB2 [+20631bp] C - 12 T vs. C 0.092 (T) - >1 (-) 0 (-) >0.05
rs28986369 chr6:32751946 HLA-DQB2 [+20635bp] C - 12 A vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs56279000 chr6:32791938 TAP2 C - 12 T vs. C 0.017 (C) - <1 (-) 0 (-) >0.05
rs34408145 chr6:32755177 HLA-DQB2 [+23866bp] C - 11 T vs. C 0.05 (C) - >1 (-) 28 (-) >0.05
rs9276855 chr6:32840989 PSMB9 [+13627bp] C - 12 C vs. G - - <1 (-) 0 (-) >0.05
rs28893528 chr6:32747661 HLA-DQB2 [+16350bp] C - 12 C vs. G 0.092 (G) 0.008 (G) <1 (-) 0 (-) >0.05
rs12664558 chr6:32758677 HLA-DOB [-21863bp] C - 12 A vs. G 0.092 (A) - >1 (-) 0 (-) >0.05
rs28986333 chr6:32747727 HLA-DQB2 [+16416bp] C - 12 A vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs7758736 chr6:32758394 HLA-DOB [-22146bp] C - 12 A vs. G 0.183 (A) - <1 (-) 0 (-) >0.05
rs142119668 chr6:32786258 HLA-DOB [+1433bp] C - 10 A vs. G - - >1 (-) 0 (-) >0.05
rs147554909 chr6:32774379 HLA-DOB [-6161bp] C - 4 A vs. G - - <1 (-) 0 (-) >0.05
rs3763354 chr6:32786917 HLA-DOB [+2092bp] C - 12 A vs. G 0.25 (G) 0.133 (G) <1 (-) 34 (-) >0.05
rs9276910 chr6:32851075 PSMB9 [+23713bp] C - 12 A vs. T 0.308 (T) 0.158 (T) <1 (-) 0 (-) >0.05
rs28986331 chr6:32744892 HLA-DQB2 [+13581bp] C - 12 T vs. C 0.075 (T) - >1 (-) 0 (-) >0.05
rs62398467 chr6:32764535 HLA-DOB [-16005bp] C - 12 T vs. C - - <1 (-) 29 (-) >0.05
rs72854947 chr6:32814368 PSMB9 C - 12 A vs. G 0.025 (A) - >1 (-) 35 (-) >0.05
rs9276900 chr6:32848566 PSMB9 [+21204bp] C - 12 A vs. C 0.308 (C) 0.158 (C) <1 (-) 0 (-) >0.05
rs73414939 chr6:32854199 PSMB9 [+26837bp] C - 12 T vs. C 0.058 (C) 0.167 (C) <1 (-) 0 (-) >0.05
rs28986350 chr6:32749175 HLA-DQB2 [+17864bp] C - 12 T vs. C 0.092 (T) - >1 (-) 0 (-) >0.05
rs9276685 chr6:32750857 HLA-DQB2 [+19546bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs13198082 chr6:32756457 HLA-DOB [-24083bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs28893555 chr6:32750573 HLA-DQB2 [+19262bp] C - 12 A vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs35486885 chr6:32763506 HLA-DOB [-17034bp] C - 12 A vs. G 0.025 (G) 0.017 (G) >1 (-) 22 (-) >0.05
rs73410774 chr6:32789739 TAP2 C - 12 C vs. G 0.058 (T) 0.042 (T) >1 (-) 0 (-) >0.05
rs28986361 chr6:32751384 HLA-DQB2 [+20073bp] C - 12 A vs. G 0.092 (A) - >1 (-) 0 (-) >0.05
rs59989068 chr6:32814456 PSMB9 C - 10 T vs. C 0.042 (T) 0.017 (T) <1 (-) 7 (-) >0.05
rs17501072 chr6:32755122 HLA-DQB2 [+23811bp] C - 12 C vs. G 0.092 (G) 0.008 (G) <1 (-) 0 (-) >0.05
rs28986380 chr6:32752392 HLA-DQB2 [+21081bp] C - 12 A vs. G 0.075 (G) - <1 (-) 0 (-) >0.05
rs60507022 chr6:32809582 PSMB8 C - 12 T vs. G 0.008 (T) - >1 (-) 19 (-) >0.05
rs56232302 chr6:32816972 PSMB9 C - 12 A vs. G 0.042 (A) - >1 (-) 36 (-) >0.05
rs13212165 chr6:32747029 HLA-DQB2 [+15718bp] C - 12 A vs. G 0.092 (A) - >1 (-) 0 (-) >0.05
rs2857151 chr6:32763514 HLA-DOB [-17026bp] C - 11 A vs. G 0.392 (A) 0.25 (A) <1 (-) 23 (-) >0.05
rs36229525 chr6:32820000 PSMB9 C - 6 A vs. C - - <1 (-) 46 (-) >0.05
rs72860334 chr6:32819330 PSMB9 C - 12 A vs. G 0.017 (G) 0.008 (G) <1 (-) 23 (-) >0.05
rs13203429 chr6:32744852 HLA-DQB2 [+13541bp] C - 12 C vs. G 0.392 (C) 0.492 (G) >1 (-) 0 (-) >0.05
rs13203438 chr6:32744869 HLA-DQB2 [+13558bp] C - 12 C vs. G 0.392 (C) 0.492 (G) >1 (-) 0 (-) >0.05
rs28893525 chr6:32747262 HLA-DQB2 [+15951bp] C - 12 A vs. G 0.092 (A) - >1 (-) 0 (-) >0.05
rs34710970 chr6:32768115 HLA-DOB [-12425bp] C - 12 A vs. G 0.05 (G) - >1 (-) 22 (-) >0.05
rs28986418 chr6:32755536 HLA-DQB2 [+24225bp] C - 12 T vs. C 0.05 (C) - <1 (-) 0 (-) >0.05
rs28986417 chr6:32755535 HLA-DQB2 [+24224bp] C - 12 T vs. C 0.05 (C) - <1 (-) 0 (-) >0.05
rs34043227 chr6:32748590 HLA-DQB2 [+17279bp] C - 12 T vs. C 0.05 (T) - <1 (-) 19 (-) >0.05

Association studies for this region [+]