TAP2, chr6:32789610-32806557 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9276627 chr6:32743835 HLA-DQB2 [+12524bp] All: C 103,235 14 C vs. T - - 1.16 (1.09-1.23) 3 (0-56) 4.81e-06
Meta_image?name=rs9276627

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs116106014 chr6:32819836 PSMB9 C - 12 A vs. T 0.017 (A) - >1 (-) 42 (-) >0.05
rs9276856 chr6:32841316 PSMB9 [+13954bp] C - 12 T vs. C 0.225 (T) 0.133 (T) >1 (-) 14 (-) >0.05
rs2157079 chr6:32762103 HLA-DOB [-18437bp] C - 12 T vs. C 0.392 (T) 0.25 (T) <1 (-) 11 (-) >0.05
rs9276715 chr6:32760723 HLA-DOB [-19817bp] C - 12 A vs. G 0.083 (A) - >1 (-) 0 (-) >0.05
rs2621371 chr6:32767091 HLA-DOB [-13449bp] C - 12 T vs. G 0.4 (G) 0.25 (G) >1 (-) 16 (-) >0.05
rs1894411 chr6:32792973 TAP2 C - 12 T vs. C 0.083 (C) 0.15 (C) <1 (-) 0 (-) >0.05
rs17213812 chr6:32815516 PSMB9 C - 11 T vs. C 0.042 (T) - >1 (-) 41 (-) >0.05
rs7742120 chr6:32785275 HLA-DOB [+450bp] C - 12 A vs. G 0.042 (A) 0.133 (A) <1 (-) 0 (-) >0.05
rs241435 chr6:32798243 TAP2 C - 12 A vs. G 0.017 (A) - >1 (-) 0 (-) >0.05
rs2621376 chr6:32763521 HLA-DOB [-17019bp] C - 12 T vs. C 0.392 (T) 0.25 (T) <1 (-) 16 (-) >0.05
rs2857103 chr6:32791299 TAP2 C - 12 A vs. C 0.367 (A) 0.417 (A) >1 (-) 3 (-) >0.05
rs2257789 chr6:32765383 HLA-DOB [-15157bp] C - 12 A vs. C 0.392 (C) 0.233 (C) >1 (-) 16 (-) >0.05
rs4947259 chr6:32851507 PSMB9 [+24145bp] C - 12 T vs. C 0.308 (T) 0.267 (T) >1 (-) 0 (-) >0.05
rs9276909 chr6:32850839 PSMB9 [+23477bp] C - 12 T vs. C 0.267 (T) 0.158 (T) >1 (-) 12 (-) >0.05
rs9276892 chr6:32846322 PSMB9 [+18960bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs1600571 chr6:32770390 HLA-DOB [-10150bp] C - 12 A vs. G 0.392 (G) 0.25 (G) >1 (-) 16 (-) >0.05
rs4510718 chr6:32750180 HLA-DQB2 [+18869bp] C - 12 A vs. T - - >1 (-) 0 (-) >0.05
rs2621354 chr6:32771354 HLA-DOB [-9186bp] C - 12 T vs. G 0.392 (T) 0.25 (T) <1 (-) 16 (-) >0.05
rs2621352 chr6:32771887 HLA-DOB [-8653bp] C - 12 T vs. C - - >1 (-) 16 (-) >0.05
rs2857144 chr6:32771610 HLA-DOB [-8930bp] C - 12 A vs. G 0.392 (A) 0.25 (A) <1 (-) 16 (-) >0.05
rs2621351 chr6:32772004 HLA-DOB [-8536bp] C - 12 T vs. G 0.367 (G) 0.25 (G) >1 (-) 16 (-) >0.05
rs114772012 chr6:32811752 PSMB8 C - 12 T vs. C 0.017 (T) - >1 (-) 14 (-) >0.05
rs2857133 chr6:32776120 HLA-DOB [-4420bp] C - 12 A vs. G 0.392 (A) 0.258 (A) <1 (-) 16 (-) >0.05
rs3763350 chr6:32787119 HLA-DOB [+2294bp] C - 10 T vs. C 0.017 (T) 0.075 (T) >1 (-) 0 (-) >0.05
rs13209654 chr6:32792659 TAP2 C - 12 T vs. C 0.083 (C) - <1 (-) 0 (-) >0.05
rs2857122 chr6:32777472 HLA-DOB [-3068bp] C - 12 A vs. G 0.4 (G) 0.25 (G) >1 (-) 16 (-) >0.05
rs9276888 chr6:32845494 PSMB9 [+18132bp] C - 12 T vs. G - - <1 (-) 0 (-) >0.05
rs9276889 chr6:32845496 PSMB9 [+18134bp] C - 12 A vs. C - - <1 (-) 0 (-) >0.05
rs13210961 chr6:32789388 TAP2 [-222bp] C - 12 A vs. G 0.092 (A) 0.008 (A) >1 (-) 0 (-) >0.05
rs17587 chr6:32825090 PSMB9 C - 11 A vs. G 0.258 (A) 0.142 (A) >1 (-) 4 (-) >0.05
rs7453903 chr6:32838949 PSMB9 [+11587bp] C - 12 T vs. C 0.308 (C) 0.275 (C) <1 (-) 0 (-) >0.05
rs72860338 chr6:32819854 PSMB9 C - 12 A vs. G 0.025 (G) - <1 (-) 32 (-) >0.05
rs9276848 chr6:32840534 PSMB9 [+13172bp] C - 12 A vs. G 0.283 (A) 0.275 (A) >1 (-) 0 (-) >0.05
rs146834055 chr6:32769173 HLA-DOB [-11367bp] C - 11 A vs. G - - >1 (-) 21 (-) >0.05
rs9276850 chr6:32840638 PSMB9 [+13276bp] C - 12 A vs. G 0.308 (G) 0.275 (G) <1 (-) 0 (-) >0.05
rs10484564 chr6:32752049 HLA-DQB2 [+20738bp] C - 12 C vs. G 0.042 (C) - <1 (-) 54 (-) >0.05
rs151258646 chr6:32762141 HLA-DOB [-18399bp] C - 11 T vs. C - - >1 (-) 22 (-) >0.05
rs9276841 chr6:32838995 PSMB9 [+11633bp] C - 12 A vs. G 0.308 (G) 0.267 (G) <1 (-) 0 (-) >0.05
rs2857152 chr6:32762654 HLA-DOB [-17886bp] C - 12 A vs. G 0.392 (A) 0.25 (A) <1 (-) 13 (-) >0.05
rs9276815 chr6:32825507 PSMB9 C - 12 T vs. C 0.292 (T) 0.158 (T) >1 (-) 0 (-) >0.05
rs1015166 chr6:32798731 TAP2 C - 12 T vs. C 0.358 (T) 0.325 (T) <1 (-) 0 (-) >0.05
rs20547 chr6:32826233 PSMB9 C - 12 A vs. G - 0.317 (G) <1 (-) 0 (-) >0.05
rs17213882 chr6:32847345 PSMB9 [+19983bp] C - 4 A vs. G - 0.008 (A) >1 (-) 45 (-) >0.05
rs2199871 chr6:32773042 HLA-DOB [-7498bp] C - 12 T vs. G 0.392 (T) 0.258 (T) <1 (-) 16 (-) >0.05
rs28986342 chr6:32748937 HLA-DQB2 [+17626bp] C - 12 T vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs9276905 chr6:32849225 PSMB9 [+21863bp] C - 12 A vs. G 0.317 (A) 0.267 (A) >1 (-) 0 (-) >0.05
rs2857143 chr6:32772636 HLA-DOB [-7904bp] C - 12 A vs. G 0.383 (A) 0.25 (A) <1 (-) 16 (-) >0.05
rs9276851 chr6:32840682 PSMB9 [+13320bp] C - 12 T vs. C 0.308 (C) 0.275 (C) <1 (-) 0 (-) >0.05
rs142231801 chr6:32817913 PSMB9 C - 5 T vs. C - - >1 (-) 5 (-) >0.05
rs12207915 chr6:32777752 HLA-DOB [-2788bp] C - 12 T vs. C 0.033 (C) 0.25 (C) >1 (-) 8 (-) >0.05

Association studies for this region [+]