TAP2, chr6:32789610-32806557 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9276627 chr6:32743835 HLA-DQB2 [+12524bp] All: C 103,235 14 C vs. T - - 1.16 (1.09-1.23) 3 (0-56) 4.81e-06
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs113849955 chr6:32817834 PSMB9 C - 5 A vs. G - - <1 (-) 5 (-) >0.05
rs9276717 chr6:32761398 HLA-DOB [-19142bp] C - 12 A vs. C 0.092 (A) - >1 (-) 0 (-) >0.05
rs7383433 chr6:32778531 HLA-DOB [-2009bp] C - 12 A vs. G 0.392 (A) 0.25 (A) <1 (-) 16 (-) >0.05
rs2621375 chr6:32763974 HLA-DOB [-16566bp] C - 12 T vs. C - - <1 (-) 16 (-) >0.05
rs9276800 chr6:32778709 HLA-DOB [-1831bp] C - 6 A vs. G - - >1 (-) 46 (-) >0.05
rs2857136 chr6:32775686 HLA-DOB [-4854bp] C - 12 A vs. G 0.392 (A) 0.25 (A) <1 (-) 16 (-) >0.05
rs9276716 chr6:32761231 HLA-DOB [-19309bp] C - 12 T vs. C 0.083 (T) - >1 (-) 0 (-) >0.05
rs2857130 chr6:32776414 HLA-DOB [-4126bp] C - 12 A vs. T 0.392 (T) 0.25 (T) >1 (-) 16 (-) >0.05
rs2857129 chr6:32776623 HLA-DOB [-3917bp] C - 12 A vs. T 0.392 (A) 0.25 (A) <1 (-) 16 (-) >0.05
rs2857128 chr6:32776832 HLA-DOB [-3708bp] C - 12 A vs. G 0.392 (A) 0.242 (A) <1 (-) 16 (-) >0.05
rs6929856 chr6:32777198 HLA-DOB [-3342bp] C - 12 A vs. C 0.4 (C) 0.25 (C) >1 (-) 16 (-) >0.05
rs6929867 chr6:32777216 HLA-DOB [-3324bp] C - 12 T vs. C 0.4 (C) 0.242 (C) >1 (-) 15 (-) >0.05
rs2621336 chr6:32776976 HLA-DOB [-3564bp] C - 12 T vs. C 0.392 (C) 0.25 (C) >1 (-) 16 (-) >0.05
rs2857127 chr6:32776854 HLA-DOB [-3686bp] C - 12 A vs. G 0.392 (A) 0.242 (A) <1 (-) 16 (-) >0.05
rs2199870 chr6:32773172 HLA-DOB [-7368bp] C - 12 T vs. C 0.392 (C) 0.258 (C) >1 (-) 17 (-) >0.05
rs2857124 chr6:32777305 HLA-DOB [-3235bp] C - 12 A vs. T 0.433 (T) 0.25 (T) >1 (-) 16 (-) >0.05
rs150593465 chr6:32803292 TAP2 C - 7 C vs. G - - <1 (-) 0 (-) >0.05
rs78738489 chr6:32802138 TAP2 C - 11 T vs. C - 0.05 (T) <1 (-) 0 (-) >0.05
rs79595056 chr6:32802154 TAP2 C - 11 A vs. C - 0.108 (A) <1 (-) 0 (-) >0.05
rs2157083 chr6:32760655 HLA-DOB [-19885bp] C - 12 T vs. C - - >1 (-) 11 (-) >0.05
rs116626221 chr6:32770355 HLA-DOB [-10185bp] C - 12 T vs. C 0.05 (T) - <1 (-) 48 (-) >0.05
rs60798676 chr6:32771973 HLA-DOB [-8567bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs28986419 chr6:32755633 HLA-DQB2 [+24322bp] C - 12 T vs. G - - <1 (-) 0 (-) >0.05
rs1383265 chr6:32739888 HLA-DQB2 [+8577bp] C - 12 T vs. C 0.192 (C) 0.358 (C) <1 (-) 0 (-) >0.05
rs2621320 chr6:32790940 TAP2 C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs2857114 chr6:32779996 HLA-DOB [-544bp] C - 12 A vs. G 0.392 (G) 0.258 (G) >1 (-) 19 (-) >0.05
rs9276903 chr6:32848998 PSMB9 [+21636bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs141309196 chr6:32839914 PSMB9 [+12552bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs28986341 chr6:32748934 HLA-DQB2 [+17623bp] C - 12 A vs. G 0.092 (A) - >1 (-) 0 (-) >0.05
rs55702652 chr6:32820991 PSMB9 C - 12 A vs. G - 0.017 (G) <1 (-) 25 (-) >0.05
rs9276718 chr6:32761674 HLA-DOB [-18866bp] C - 12 C vs. G 0.092 (C) - >1 (-) 0 (-) >0.05
rs147781459 chr6:32745465 HLA-DQB2 [+14154bp] C - 12 T vs. G - - >1 (-) 39 (-) >0.05
rs2621416 chr6:32741868 HLA-DQB2 [+10557bp] C - 12 T vs. C 0.292 (C) 0.433 (C) <1 (-) 4 (-) >0.05
rs28986411 chr6:32755275 HLA-DQB2 [+23964bp] C - 12 A vs. G 0.092 (G) 0.008 (G) <1 (-) 0 (-) >0.05
rs116481206 chr6:32832218 PSMB9 [+4856bp] C - 12 A vs. T 0.017 (T) - <1 (-) 41 (-) >0.05
rs9276833 chr6:32836710 PSMB9 [+9348bp] C - 12 T vs. C 0.308 (C) 0.267 (C) <1 (-) 0 (-) >0.05
rs9276719 chr6:32761690 HLA-DOB [-18850bp] C - 12 A vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs6931062 chr6:32835615 PSMB9 [+8253bp] C - 12 A vs. C 0.308 (A) 0.275 (A) >1 (-) 0 (-) >0.05
rs139345337 chr6:32790641 TAP2 C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs2621332 chr6:32780317 HLA-DOB [-223bp] C - 12 A vs. G 0.392 (G) 0.25 (G) >1 (-) 15 (-) >0.05
rs28893556 chr6:32750675 HLA-DQB2 [+19364bp] C - 12 T vs. G - - >1 (-) 0 (-) >0.05
rs147016287 chr6:32810884 PSMB8 C - 5 A vs. G - - <1 (-) 3 (-) >0.05
rs150339972 chr6:32851380 PSMB9 [+24018bp] C - 4 A vs. C - - >1 (-) 45 (-) >0.05
rs16870914 chr6:32791774 TAP2 C - 12 C vs. G 0.017 (C) - >1 (-) 0 (-) >0.05
rs9276864 chr6:32843238 PSMB9 [+15876bp] C - 12 T vs. G 0.3 (T) 0.275 (T) >1 (-) 0 (-) >0.05
rs140236723 chr6:32847038 PSMB9 [+19676bp] C - 11 A vs. T - - <1 (-) 0 (-) >0.05
rs9276624 chr6:32743652 HLA-DQB2 [+12341bp] C - 12 A vs. G 0.35 (G) 0.233 (G) >1 (-) 9 (-) >0.05
rs9276658 chr6:32746731 HLA-DQB2 [+15420bp] C - 12 A vs. G - - <1 (-) 24 (-) >0.05
rs117457996 chr6:32741857 HLA-DQB2 [+10546bp] C - 9 T vs. C - 0.058 (C) <1 (-) 0 (-) >0.05
rs9276893 chr6:32846480 PSMB9 [+19118bp] C - 12 T vs. C 0.3 (T) 0.233 (T) >1 (-) 0 (-) >0.05

Association studies for this region [+]