TAP2, chr6:32789610-32806557 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9276627 chr6:32743835 HLA-DQB2 [+12524bp] All: C 103,235 14 C vs. T - - 1.16 (1.09-1.23) 3 (0-56) 4.81e-06
Meta_image?name=rs9276627

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2857205 chr6:32744145 HLA-DQB2 [+12834bp] C - 12 A vs. G 0.35 (A) 0.233 (A) <1 (-) 9 (-) >0.05
rs7765121 chr6:32842210 PSMB9 [+14848bp] C - 12 A vs. G 0.317 (G) 0.275 (G) <1 (-) 0 (-) >0.05
rs7765145 chr6:32842252 PSMB9 [+14890bp] C - 12 A vs. G 0.308 (G) 0.275 (G) <1 (-) 0 (-) >0.05
rs9276863 chr6:32843043 PSMB9 [+15681bp] C - 12 A vs. G 0.3 (G) 0.275 (G) <1 (-) 0 (-) >0.05
rs28893524 chr6:32746671 HLA-DQB2 [+15360bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs7747111 chr6:32842050 PSMB9 [+14688bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs9276880 chr6:32843968 PSMB9 [+16606bp] C - 12 C vs. G 0.283 (G) 0.275 (G) <1 (-) 0 (-) >0.05
rs9276859 chr6:32841544 PSMB9 [+14182bp] C - 12 A vs. G 0.308 (A) 0.275 (A) >1 (-) 0 (-) >0.05
rs145420575 chr6:32761126 HLA-DOB [-19414bp] C - 11 T vs. C - - <1 (-) 12 (-) >0.05
rs141973979 chr6:32743732 HLA-DQB2 [+12421bp] C - 10 A vs. G - - >1 (-) 0 (-) >0.05
rs138904557 chr6:32743754 HLA-DQB2 [+12443bp] C - 10 T vs. C - - >1 (-) 0 (-) >0.05
rs183585 chr6:32799673 TAP2 C - 12 A vs. G 0.183 (A) 0.317 (A) <1 (-) 0 (-) >0.05
rs2621406 chr6:32747959 HLA-DQB2 [+16648bp] C - 12 T vs. G 0.342 (G) 0.242 (G) >1 (-) 9 (-) >0.05
rs2857191 chr6:32747971 HLA-DQB2 [+16660bp] C - 12 A vs. G 0.35 (A) 0.242 (A) <1 (-) 9 (-) >0.05
rs719653 chr6:32752566 HLA-DQB2 [+21255bp] C - 12 T vs. C 0.342 (C) 0.233 (C) >1 (-) 7 (-) >0.05
rs9276693 chr6:32755937 HLA-DOB [-24603bp] C - 12 A vs. T - - >1 (-) 11 (-) >0.05
rs142092388 chr6:32745219 HLA-DQB2 [+13908bp] C - 11 A vs. C - - >1 (-) 0 (-) >0.05
rs9276844 chr6:32840092 PSMB9 [+12730bp] C - 11 A vs. G 0.308 (G) 0.275 (G) >1 (-) 0 (-) >0.05
rs2857206 chr6:32744050 HLA-DQB2 [+12739bp] C - 12 A vs. G 0.358 (G) 0.233 (G) >1 (-) 11 (-) >0.05
rs2621419 chr6:32741006 HLA-DQB2 [+9695bp] C - 12 T vs. C 0.35 (T) 0.292 (T) <1 (-) 12 (-) >0.05
rs9276621 chr6:32743617 HLA-DQB2 [+12306bp] C - 12 A vs. G 0.417 (A) - <1 (-) 10 (-) >0.05
rs9276620 chr6:32743614 HLA-DQB2 [+12303bp] C - 12 A vs. G 0.408 (A) - <1 (-) 10 (-) >0.05
rs9276860 chr6:32841596 PSMB9 [+14234bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs9276622 chr6:32743624 HLA-DQB2 [+12313bp] C - 12 T vs. G - - <1 (-) 11 (-) >0.05
rs2857194 chr6:32747273 HLA-DQB2 [+15962bp] C - 12 A vs. T 0.342 (A) 0.233 (A) <1 (-) 8 (-) >0.05
rs9276904 chr6:32849009 PSMB9 [+21647bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs117186380 chr6:32741886 HLA-DQB2 [+10575bp] C - 10 A vs. G - 0.058 (G) <1 (-) 0 (-) >0.05
rs56294406 chr6:32798647 TAP2 C - 11 A vs. T 0.008 (T) 0.042 (T) >1 (-) 0 (-) >0.05
rs2857195 chr6:32747060 HLA-DQB2 [+15749bp] C - 12 T vs. C 0.342 (C) 0.233 (C) >1 (-) 10 (-) >0.05
rs2621390 chr6:32757453 HLA-DOB [-23087bp] C - 12 T vs. C 0.342 (C) 0.233 (C) >1 (-) 8 (-) >0.05
rs56034132 chr6:32823634 PSMB9 C - 12 T vs. C - - <1 (-) 11 (-) >0.05
rs36202977 chr6:32823354 PSMB9 C - 12 T vs. G - - <1 (-) 11 (-) >0.05
rs9276881 chr6:32844214 PSMB9 [+16852bp] C - 12 A vs. T 0.308 (A) 0.267 (A) >1 (-) 0 (-) >0.05
rs2857207 chr6:32743173 HLA-DQB2 [+11862bp] C - 12 A vs. G 0.383 (A) 0.275 (A) <1 (-) 7 (-) >0.05
rs9276657 chr6:32746674 HLA-DQB2 [+15363bp] C - 12 T vs. G - - <1 (-) 12 (-) >0.05
chr6:32785622 chr6:32785622 HLA-DOB [+797bp] C - 11 C vs. G - - >1 (-) 0 (-) >0.05
rs2621404 chr6:32748633 HLA-DQB2 [+17322bp] C - 12 C vs. G 0.35 (G) 0.233 (G) >1 (-) 11 (-) >0.05
rs17220199 chr6:32806029 TAP2 C - 4 C vs. G - - >1 (-) 46 (-) >0.05
rs9276674 chr6:32749704 HLA-DQB2 [+18393bp] C - 12 T vs. C 0.358 (T) - <1 (-) 12 (-) >0.05
rs146835838 chr6:32845596 PSMB9 [+18234bp] C - 9 T vs. C - - <1 (-) 0 (-) >0.05
rs146048758 chr6:32772397 HLA-DOB [-8143bp] C - 4 A vs. G - - <1 (-) 0 (-) >0.05
rs7767680 chr6:32830417 PSMB9 [+3055bp] C - 12 T vs. C 0.267 (T) 0.142 (T) >1 (-) 0 (-) >0.05
rs150773494 chr6:32830403 PSMB9 [+3041bp] C - 9 C vs. G - - >1 (-) 0 (-) >0.05
rs150371615 chr6:32840027 PSMB9 [+12665bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs2857172 chr6:32755023 HLA-DQB2 [+23712bp] C - 12 T vs. C 0.342 (T) 0.233 (T) <1 (-) 9 (-) >0.05
rs2857170 chr6:32756961 HLA-DOB [-23579bp] C - 12 A vs. G - - <1 (-) 8 (-) >0.05
rs9276641 chr6:32744714 HLA-DQB2 [+13403bp] C - 12 A vs. G - - <1 (-) 10 (-) >0.05
rs2621401 chr6:32750279 HLA-DQB2 [+18968bp] C - 12 T vs. C - - <1 (-) 10 (-) >0.05
rs2857187 chr6:32750031 HLA-DQB2 [+18720bp] C - 12 T vs. C 0.35 (C) - >1 (-) 10 (-) >0.05
rs9276633 chr6:32744452 HLA-DQB2 [+13141bp] C - 12 A vs. G 0.4 (G) 0.233 (G) >1 (-) 8 (-) >0.05

Association studies for this region [+]