TAP2, chr6:32789610-32806557 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9276627 chr6:32743835 HLA-DQB2 [+12524bp] All: C 103,235 14 C vs. T - - 1.16 (1.09-1.23) 3 (0-56) 4.81e-06
Meta_image?name=rs9276627

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs7760769 chr6:32746436 HLA-DQB2 [+15125bp] C - 12 A vs. G - - <1 (-) 5 (-) >0.05
rs9276626 chr6:32743803 HLA-DQB2 [+12492bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs28986401 chr6:32754767 HLA-DQB2 [+23456bp] C - 12 A vs. G 0.092 (A) - <1 (-) 0 (-) >0.05
rs28986402 chr6:32754781 HLA-DQB2 [+23470bp] C - 12 T vs. C 0.092 (T) - <1 (-) 0 (-) >0.05
rs241429 chr6:32803840 TAP2 C - 12 A vs. G 0.458 (A) 0.35 (A) >1 (-) 0 (-) >0.05
rs9276697 chr6:32756363 HLA-DOB [-24177bp] C - 12 T vs. C 0.342 (T) - <1 (-) 8 (-) >0.05
rs9276673 chr6:32749611 HLA-DQB2 [+18300bp] C - 12 T vs. G 0.45 (G) 0.242 (G) <1 (-) 7 (-) >0.05
rs1988565 chr6:32753492 HLA-DQB2 [+22181bp] C - 12 A vs. G 0.342 (G) 0.233 (G) >1 (-) 9 (-) >0.05
rs9276797 chr6:32778648 HLA-DOB [-1892bp] C - 12 A vs. G 0.4 (A) - >1 (-) 24 (-) >0.05
rs2857168 chr6:32757131 HLA-DOB [-23409bp] C - 12 T vs. C 0.342 (T) 0.25 (T) <1 (-) 9 (-) >0.05
rs2621388 chr6:32757938 HLA-DOB [-22602bp] C - 12 A vs. G 0.342 (A) 0.25 (A) <1 (-) 9 (-) >0.05
rs55821731 chr6:32824067 PSMB9 C - 12 C vs. G 0.017 (C) - >1 (-) 16 (-) >0.05
rs1988564 chr6:32753682 HLA-DQB2 [+22371bp] C - 12 T vs. C 0.342 (T) 0.233 (T) <1 (-) 9 (-) >0.05
rs1988563 chr6:32753739 HLA-DQB2 [+22428bp] C - 12 A vs. T 0.35 (A) 0.233 (A) <1 (-) 9 (-) >0.05
rs9276704 chr6:32756825 HLA-DOB [-23715bp] C - 12 T vs. G 0.342 (T) 0.242 (T) <1 (-) 9 (-) >0.05
rs147849938 chr6:32851192 PSMB9 [+23830bp] C - 5 A vs. C - - >1 (-) 0 (-) >0.05
rs9276887 chr6:32845220 PSMB9 [+17858bp] C - 12 A vs. T 0.308 (A) 0.267 (A) >1 (-) 0 (-) >0.05
rs9276640 chr6:32744684 HLA-DQB2 [+13373bp] C - 12 T vs. C - - >1 (-) 12 (-) >0.05
rs2857198 chr6:32746920 HLA-DQB2 [+15609bp] C - 12 T vs. C 0.342 (T) 0.233 (T) <1 (-) 10 (-) >0.05
rs2857196 chr6:32747012 HLA-DQB2 [+15701bp] C - 12 A vs. G 0.342 (G) 0.233 (G) >1 (-) 10 (-) >0.05
rs2857197 chr6:32746984 HLA-DQB2 [+15673bp] C - 12 T vs. C 0.342 (T) 0.233 (T) <1 (-) 10 (-) >0.05
rs1158783 chr6:32758966 HLA-DOB [-21574bp] C - 12 T vs. C 0.342 (C) 0.25 (C) >1 (-) 8 (-) >0.05
rs2621377 chr6:32763110 HLA-DOB [-17430bp] C - 12 T vs. C 0.483 (C) 0.25 (C) >1 (-) 17 (-) >0.05
rs2857178 chr6:32752788 HLA-DQB2 [+21477bp] C - 12 A vs. G 0.35 (G) 0.233 (G) >1 (-) 10 (-) >0.05
rs2621382 chr6:32760445 HLA-DOB [-20095bp] C - 12 T vs. G 0.483 (G) 0.258 (G) >1 (-) 17 (-) >0.05
rs9276619 chr6:32743548 HLA-DQB2 [+12237bp] C - 12 A vs. G - - <1 (-) 11 (-) >0.05
rs2621393 chr6:32755216 HLA-DQB2 [+23905bp] C - 12 C vs. G 0.342 (C) 0.242 (C) <1 (-) 7 (-) >0.05
rs9276617 chr6:32743463 HLA-DQB2 [+12152bp] C - 12 A vs. G - - >1 (-) 14 (-) >0.05
rs1842399 chr6:32753313 HLA-DQB2 [+22002bp] C - 12 C vs. G 0.342 (C) 0.233 (C) <1 (-) 9 (-) >0.05
rs4959119 chr6:32845729 PSMB9 [+18367bp] C - 12 T vs. C 0.308 (C) 0.267 (C) <1 (-) 0 (-) >0.05
rs2856992 chr6:32800221 TAP2 C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs9276618 chr6:32743483 HLA-DQB2 [+12172bp] C - 12 T vs. C 0.4 (T) 0.25 (T) <1 (-) 4 (-) >0.05
rs2621409 chr6:32746845 HLA-DQB2 [+15534bp] C - 12 T vs. C 0.342 (T) 0.233 (T) <1 (-) 13 (-) >0.05
rs2261684 chr6:32758667 HLA-DOB [-21873bp] C - 12 A vs. T 0.433 (A) 0.258 (A) >1 (-) 2 (-) >0.05
rs9501208 chr6:32746510 HLA-DQB2 [+15199bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs719652 chr6:32752577 HLA-DQB2 [+21266bp] C - 12 T vs. C 0.342 (C) 0.233 (C) >1 (-) 10 (-) >0.05
rs149728623 chr6:32827940 PSMB9 [+578bp] C - 12 T vs. C - - <1 (-) 18 (-) >0.05
rs2621392 chr6:32757001 HLA-DOB [-23539bp] C - 12 T vs. C - - >1 (-) 4 (-) >0.05
rs145751415 chr6:32827954 PSMB9 [+592bp] C - 12 A vs. G - - >1 (-) 18 (-) >0.05
rs9276639 chr6:32744667 HLA-DQB2 [+13356bp] C - 12 C vs. G - - <1 (-) 10 (-) >0.05
rs9276642 chr6:32744730 HLA-DQB2 [+13419bp] C - 12 A vs. G - - <1 (-) 7 (-) >0.05
rs115448877 chr6:32827993 PSMB9 [+631bp] C - 12 C vs. G - - >1 (-) 18 (-) >0.05
rs138445693 chr6:32829076 PSMB9 [+1714bp] C - 9 A vs. G - - <1 (-) 0 (-) >0.05
rs143633171 chr6:32828140 PSMB9 [+778bp] C - 12 T vs. C - - >1 (-) 18 (-) >0.05
rs117181433 chr6:32739625 HLA-DQB2 [+8314bp] C - 11 T vs. C - 0.092 (C) <1 (-) 0 (-) >0.05
rs145484203 chr6:32819228 PSMB9 C - 5 T vs. G - - >1 (-) 31 (-) >0.05
rs36234338 chr6:32822887 PSMB9 C - 12 A vs. G - - >1 (-) 16 (-) >0.05
rs241417 chr6:32827916 PSMB9 [+554bp] C - 12 T vs. C 0.008 (C) - <1 (-) 0 (-) >0.05
rs142607998 chr6:32828157 PSMB9 [+795bp] C - 12 C vs. G - - >1 (-) 18 (-) >0.05
rs28724894 chr6:32758648 HLA-DOB [-21892bp] C - 12 A vs. G 0.033 (A) - >1 (-) 0 (-) >0.05

Association studies for this region [+]