TAP2, chr6:32789610-32806557 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9276627 chr6:32743835 HLA-DQB2 [+12524bp] All: C 103,235 14 C vs. T - - 1.16 (1.09-1.23) 3 (0-56) 4.81e-06
Meta_image?name=rs9276627

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs241420 chr6:32823393 PSMB9 C - 12 T vs. C 0.017 (T) - >1 (-) 0 (-) >0.05
rs241419 chr6:32823948 PSMB9 C - 12 A vs. G 0.017 (A) - >1 (-) 0 (-) >0.05
rs73739311 chr6:32764763 HLA-DOB [-15777bp] C - 12 T vs. C - 0.05 (T) >1 (-) 4 (-) >0.05
rs2857139 chr6:32775465 HLA-DOB [-5075bp] C - 12 C vs. G 0.392 (C) 0.25 (C) <1 (-) 16 (-) >0.05
rs62397690 chr6:32803613 TAP2 C - 12 T vs. C 0.017 (T) - <1 (-) 0 (-) >0.05
rs114113679 chr6:32828346 PSMB9 [+984bp] C - 12 T vs. C - - >1 (-) 19 (-) >0.05
rs73739316 chr6:32766406 HLA-DOB [-14134bp] C - 12 T vs. C - 0.058 (C) <1 (-) 5 (-) >0.05
rs9276705 chr6:32756833 HLA-DOB [-23707bp] C - 12 T vs. C 0.433 (T) 0.242 (T) >1 (-) 9 (-) >0.05
rs2857169 chr6:32757080 HLA-DOB [-23460bp] C - 12 A vs. T 0.358 (T) 0.233 (T) >1 (-) 10 (-) >0.05
rs9276634 chr6:32744466 HLA-DQB2 [+13155bp] C - 12 A vs. G 0.367 (G) 0.233 (G) >1 (-) 8 (-) >0.05
rs121917702 chr6:32814909 PSMB9 C - 10 T vs. C - - >1 (-) 0 (-) >0.05
rs115033676 chr6:32828444 PSMB9 [+1082bp] C - 12 A vs. G 0.017 (A) - >1 (-) 19 (-) >0.05
rs1158785 chr6:32758571 HLA-DOB [-21969bp] C - 12 T vs. C 0.433 (T) 0.25 (T) >1 (-) 5 (-) >0.05
rs2621425 chr6:32846587 PSMB9 [+19225bp] C - 12 T vs. C 0.308 (T) 0.233 (T) >1 (-) 0 (-) >0.05
rs2621386 chr6:32758268 HLA-DOB [-22272bp] C - 12 A vs. C 0.433 (C) 0.25 (C) <1 (-) 5 (-) >0.05
rs2857164 chr6:32758219 HLA-DOB [-22321bp] C - 12 A vs. C 0.433 (C) 0.25 (C) <1 (-) 5 (-) >0.05
rs9276703 chr6:32756794 HLA-DOB [-23746bp] C - 12 A vs. T - - >1 (-) 9 (-) >0.05
rs9276901 chr6:32848889 PSMB9 [+21527bp] C - 12 T vs. C 0.308 (C) 0.258 (C) <1 (-) 0 (-) >0.05
rs13203581 chr6:32752546 HLA-DQB2 [+21235bp] C - 12 A vs. G 0.083 (G) - >1 (-) 0 (-) >0.05
rs149231735 chr6:32799685 TAP2 C - 6 C vs. G - - >1 (-) 0 (-) >0.05
rs2621426 chr6:32846570 PSMB9 [+19208bp] C - 12 T vs. C 0.308 (T) 0.267 (T) >1 (-) 0 (-) >0.05
rs2621387 chr6:32757971 HLA-DOB [-22569bp] C - 12 A vs. C 0.433 (C) 0.25 (C) <1 (-) 5 (-) >0.05
rs2239697 chr6:32782897 HLA-DOB C - 3 T vs. C - 0.058 (T) <1 (-) 0 (-) >0.05
rs2071463 chr6:32812528 PSMB9 C - 12 T vs. C 0.142 (T) 0.45 (T) >1 (-) 0 (-) >0.05
rs114180354 chr6:32828926 PSMB9 [+1564bp] C - 12 T vs. G - - >1 (-) 19 (-) >0.05
rs116482079 chr6:32744415 HLA-DQB2 [+13104bp] C - 7 T vs. C 0.042 (T) 0.117 (T) <1 (-) 0 (-) >0.05
rs2621389 chr6:32757532 HLA-DOB [-23008bp] C - 12 A vs. C 0.433 (C) 0.25 (C) <1 (-) 5 (-) >0.05
rs56297443 chr6:32832037 PSMB9 [+4675bp] C - 11 T vs. C - 0.1 (C) <1 (-) 0 (-) >0.05
rs9276638 chr6:32744593 HLA-DQB2 [+13282bp] C - 12 T vs. C - - <1 (-) 11 (-) >0.05
rs72860355 chr6:32836582 PSMB9 [+9220bp] C - 10 T vs. G - - <1 (-) 0 (-) >0.05
rs9276701 chr6:32756732 HLA-DOB [-23808bp] C - 12 C vs. G 0.35 (G) - >1 (-) 9 (-) >0.05
rs2857173 chr6:32754920 HLA-DQB2 [+23609bp] C - 12 A vs. G 0.342 (G) 0.233 (G) >1 (-) 6 (-) >0.05
rs2857165 chr6:32757737 HLA-DOB [-22803bp] C - 12 A vs. G 0.433 (G) 0.25 (G) <1 (-) 5 (-) >0.05
rs55875672 chr6:32784304 HLA-DOB C - 12 T vs. C 0.025 (T) - <1 (-) 0 (-) >0.05
rs138040914 chr6:32775965 HLA-DOB [-4575bp] C - 7 A vs. T - - >1 (-) 8 (-) >0.05
rs2621384 chr6:32759273 HLA-DOB [-21267bp] C - 12 T vs. C 0.433 (C) 0.25 (C) <1 (-) 11 (-) >0.05
rs2857166 chr6:32757594 HLA-DOB [-22946bp] C - 12 T vs. G 0.433 (G) 0.25 (G) <1 (-) 5 (-) >0.05
rs116430092 chr6:32832495 PSMB9 [+5133bp] C - 12 A vs. G 0.017 (A) - >1 (-) 23 (-) >0.05
rs9276643 chr6:32744834 HLA-DQB2 [+13523bp] C - 12 C vs. G 0.358 (G) 0.242 (G) >1 (-) 19 (-) >0.05
rs241415 chr6:32842691 PSMB9 [+15329bp] C - 12 T vs. G - - <1 (-) 0 (-) >0.05
rs2856997 chr6:32781776 HLA-DOB C - 12 A vs. C 0.433 (A) 0.467 (C) <1 (-) 0 (-) >0.05
rs2857190 chr6:32748045 HLA-DQB2 [+16734bp] C - 12 T vs. C 0.342 (T) 0.233 (T) <1 (-) 0 (-) >0.05
rs9276698 chr6:32756386 HLA-DOB [-24154bp] C - 12 A vs. G 0.433 (G) 0.242 (G) <1 (-) 5 (-) >0.05
rs116751869 chr6:32819660 PSMB9 C - 12 A vs. G 0.017 (A) - <1 (-) 0 (-) >0.05
rs9276694 chr6:32756030 HLA-DOB [-24510bp] C - 12 T vs. C - - >1 (-) 5 (-) >0.05
rs62397685 chr6:32789111 TAP2 [-499bp] C - 12 A vs. G 0.025 (G) - >1 (-) 0 (-) >0.05
rs2070120 chr6:32780914 HLA-DOB C - 12 A vs. G 0.05 (A) 0.05 (A) <1 (-) 0 (-) >0.05
rs150014887 chr6:32831013 PSMB9 [+3651bp] C - 12 A vs. G - - <1 (-) 22 (-) >0.05
rs114484798 chr6:32842540 PSMB9 [+15178bp] C - 12 A vs. G - - >1 (-) 24 (-) >0.05
rs56077117 chr6:32810124 PSMB8 C - 11 A vs. G 0.017 (G) - <1 (-) 0 (-) >0.05

Association studies for this region [+]