TAP2, chr6:32789610-32806557 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9276627 chr6:32743835 HLA-DQB2 [+12524bp] All: C 103,235 14 C vs. T - - 1.16 (1.09-1.23) 3 (0-56) 4.81e-06
Meta_image?name=rs9276627

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs56238531 chr6:32809568 PSMB8 C - 11 A vs. G - - >1 (-) 0 (-) >0.05
rs36234342 chr6:32823186 PSMB9 C - 12 T vs. G 0.008 (G) - >1 (-) 0 (-) >0.05
rs2621400 chr6:32750318 HLA-DQB2 [+19007bp] C - 12 C vs. G 0.417 (G) 0.233 (G) <1 (-) 6 (-) >0.05
rs141357388 chr6:32762799 HLA-DOB [-17741bp] C - 3 A vs. C - - >1 (-) 0 (-) >0.05
rs7767732 chr6:32853277 PSMB9 [+25915bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs13203691 chr6:32752647 HLA-DQB2 [+21336bp] C - 12 A vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs13219964 chr6:32752649 HLA-DQB2 [+21338bp] C - 12 T vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs4148871 chr6:32803316 TAP2 C - 12 A vs. G 0.225 (A) 0.117 (A) >1 (-) 0 (-) >0.05
rs28892574 chr6:32756320 HLA-DOB [-24220bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs2621395 chr6:32754367 HLA-DQB2 [+23056bp] C - 12 T vs. G - - <1 (-) 4 (-) >0.05
rs2621399 chr6:32750951 HLA-DQB2 [+19640bp] C - 12 T vs. C 0.408 (C) 0.233 (C) <1 (-) 6 (-) >0.05
rs9276883 chr6:32844922 PSMB9 [+17560bp] C - 12 A vs. G 0.308 (A) 0.267 (A) >1 (-) 0 (-) >0.05
rs9276672 chr6:32749606 HLA-DQB2 [+18295bp] C - 12 A vs. C 0.342 (C) 0.233 (C) >1 (-) 11 (-) >0.05
rs2857188 chr6:32749805 HLA-DQB2 [+18494bp] C - 12 A vs. G 0.15 (A) - <1 (-) 0 (-) >0.05
rs2857177 chr6:32752840 HLA-DQB2 [+21529bp] C - 12 T vs. C 0.433 (T) 0.233 (T) >1 (-) 7 (-) >0.05
rs2857189 chr6:32748943 HLA-DQB2 [+17632bp] C - 12 T vs. G 0.4 (G) 0.233 (G) <1 (-) 14 (-) >0.05
rs28724898 chr6:32803408 TAP2 C - 12 A vs. T 0.042 (A) - >1 (-) 50 (-) >0.05
rs150190123 chr6:32749758 HLA-DQB2 [+18447bp] C - 11 A vs. G - - <1 (-) 21 (-) >0.05
rs17213693 chr6:32781121 HLA-DOB C - 12 C vs. G 0.05 (C) 0.033 (C) >1 (-) 0 (-) >0.05
rs9276799 chr6:32778686 HLA-DOB [-1854bp] C - 12 C vs. G - - >1 (-) 17 (-) >0.05
rs2621348 chr6:32772575 HLA-DOB [-7965bp] C - 12 T vs. G 0.383 (T) - <1 (-) 18 (-) >0.05
rs2621407 chr6:32747569 HLA-DQB2 [+16258bp] C - 12 T vs. C 0.433 (C) 0.25 (C) >1 (-) 15 (-) >0.05
rs2857192 chr6:32747550 HLA-DQB2 [+16239bp] C - 12 A vs. T 0.433 (T) 0.25 (T) >1 (-) 15 (-) >0.05
rs2857183 chr6:32750982 HLA-DQB2 [+19671bp] C - 12 A vs. G 0.342 (A) 0.233 (A) <1 (-) 0 (-) >0.05
rs2621418 chr6:32853605 PSMB9 [+26243bp] C - 12 A vs. C 0.017 (C) - >1 (-) 0 (-) >0.05
rs9276798 chr6:32778672 HLA-DOB [-1868bp] C - 12 T vs. C - - >1 (-) 17 (-) >0.05
rs17220087 chr6:32781076 HLA-DOB C - 12 A vs. C 0.058 (A) 0.108 (A) <1 (-) 0 (-) >0.05
rs9276653 chr6:32746414 HLA-DQB2 [+15103bp] C - 12 A vs. G - - <1 (-) 12 (-) >0.05
rs28892573 chr6:32750915 HLA-DQB2 [+19604bp] C - 12 A vs. G 0.033 (G) - <1 (-) 0 (-) >0.05
rs2621408 chr6:32747542 HLA-DQB2 [+16231bp] C - 12 C vs. G 0.408 (C) 0.25 (C) <1 (-) 18 (-) >0.05
rs2071539 chr6:32818430 PSMB9 C - 12 C vs. G 0.008 (G) 0.108 (G) <1 (-) 0 (-) >0.05
rs2857193 chr6:32747528 HLA-DQB2 [+16217bp] C - 12 A vs. G 0.433 (G) 0.25 (G) <1 (-) 9 (-) >0.05
rs11575907 chr6:32782112 HLA-DOB C - 12 T vs. C 0.033 (T) - <1 (-) 0 (-) >0.05
rs2621405 chr6:32748039 HLA-DQB2 [+16728bp] C - 12 T vs. C 0.417 (C) 0.242 (C) <1 (-) 8 (-) >0.05
rs148057848 chr6:32842783 PSMB9 [+15421bp] C - 11 A vs. G - - <1 (-) 0 (-) >0.05
rs140654840 chr6:32802938 TAP2 C - 11 T vs. C - - >1 (-) 0 (-) >0.05
rs62396667 chr6:32741158 HLA-DQB2 [+9847bp] C - 12 A vs. G 0.008 (G) - <1 (-) 0 (-) >0.05
rs17220297 chr6:32852052 PSMB9 [+24690bp] C - 9 T vs. G 0.008 (T) - >1 (-) 0 (-) >0.05
rs2621421 chr6:32740671 HLA-DQB2 [+9360bp] C - 12 C vs. G 0.417 (G) 0.275 (G) <1 (-) 24 (-) >0.05
rs4947354 chr6:32851701 PSMB9 [+24339bp] C - 12 T vs. C 0.017 (T) 0.108 (T) >1 (-) 26 (-) >0.05
rs4947355 chr6:32851937 PSMB9 [+24575bp] C - 12 T vs. C 0.017 (C) 0.108 (C) <1 (-) 26 (-) >0.05
rs2071466 chr6:32805307 TAP2 C - 12 T vs. C 0.275 (T) 0.108 (T) <1 (-) 0 (-) >0.05
rs199702851 chr6:32853339 PSMB9 [+25977bp] C - 7 C vs. G - - <1 (-) 37 (-) >0.05
rs1894407 chr6:32787036 HLA-DOB [+2211bp] C - 12 A vs. C 0.4 (A) 0.467 (C) >1 (-) 0 (-) >0.05
rs115454812 chr6:32739931 HLA-DQB2 [+8620bp] C - 10 A vs. G 0.008 (A) 0.133 (A) >1 (-) 0 (-) >0.05
rs2621394 chr6:32754409 HLA-DQB2 [+23098bp] C - 12 A vs. G 0.442 (A) - >1 (-) 11 (-) >0.05
rs2857182 chr6:32751179 HLA-DQB2 [+19868bp] C - 12 A vs. G 0.433 (A) 0.233 (A) >1 (-) 5 (-) >0.05
rs7382236 chr6:32778622 HLA-DOB [-1918bp] C - 12 T vs. C 0.4 (T) 0.25 (T) <1 (-) 11 (-) >0.05
rs150953172 chr6:32744988 HLA-DQB2 [+13677bp] C - 6 T vs. C - - >1 (-) 20 (-) >0.05
rs2857175 chr6:32754398 HLA-DQB2 [+23087bp] C - 12 A vs. G - - <1 (-) 8 (-) >0.05

Association studies for this region [+]