TAP2, chr6:32789610-32806557 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9276627 chr6:32743835 HLA-DQB2 [+12524bp] All: C 103,235 14 C vs. T - - 1.16 (1.09-1.23) 3 (0-56) 4.81e-06
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs719654 chr6:32752139 HLA-DQB2 [+20828bp] C - 12 A vs. G 0.225 (A) 0.3 (A) >1 (-) 1 (-) >0.05
rs2621368 chr6:32768333 HLA-DOB [-12207bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs241453 chr6:32796226 TAP2 C - 12 A vs. G 0.3 (A) 0.358 (A) >1 (-) 0 (-) >0.05
rs2219893 chr6:32769663 HLA-DOB [-10877bp] C - 12 T vs. C 0.342 (C) 0.375 (C) <1 (-) 0 (-) >0.05
rs241456 chr6:32795965 TAP2 C - 12 A vs. G 0.3 (A) 0.358 (A) >1 (-) 0 (-) >0.05
rs2621356 chr6:32771033 HLA-DOB [-9507bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs241455 chr6:32796019 TAP2 C - 12 A vs. C 0.3 (A) 0.358 (A) >1 (-) 0 (-) >0.05
rs1480381 chr6:32775235 HLA-DOB [-5305bp] C - 12 A vs. T 0.342 (T) 0.367 (T) <1 (-) 0 (-) >0.05
rs2621372 chr6:32765302 HLA-DOB [-15238bp] C - 12 A vs. C 0.342 (A) 0.367 (A) >1 (-) 0 (-) >0.05
rs2621364 chr6:32769204 HLA-DOB [-11336bp] C - 12 A vs. G 0.342 (A) 0.367 (A) >1 (-) 0 (-) >0.05
rs2199874 chr6:32769926 HLA-DOB [-10614bp] C - 12 A vs. G 0.342 (G) 0.375 (G) <1 (-) 0 (-) >0.05
rs2621363 chr6:32769389 HLA-DOB [-11151bp] C - 12 T vs. G 0.342 (G) 0.367 (G) <1 (-) 0 (-) >0.05
rs2857131 chr6:32776258 HLA-DOB [-4282bp] C - 12 A vs. T 0.333 (T) 0.367 (T) <1 (-) 0 (-) >0.05
rs2621358 chr6:32770808 HLA-DOB [-9732bp] C - 12 T vs. C 0.35 (T) 0.367 (T) >1 (-) 0 (-) >0.05
rs2857146 chr6:32770983 HLA-DOB [-9557bp] C - 12 A vs. G 0.342 (G) 0.367 (G) <1 (-) 0 (-) >0.05
rs2857115 chr6:32778281 HLA-DOB [-2259bp] C - 12 A vs. G 0.325 (A) 0.367 (A) >1 (-) 9 (-) >0.05
rs2857138 chr6:32775496 HLA-DOB [-5044bp] C - 12 A vs. G 0.342 (A) 0.367 (A) >1 (-) 0 (-) >0.05
rs2621322 chr6:32788712 TAP2 [-898bp] C - 12 T vs. G 0.2 (G) 0.35 (G) <1 (-) 0 (-) >0.05
rs2127674 chr6:32777150 HLA-DOB [-3390bp] C - 12 A vs. G 0.333 (G) 0.342 (G) <1 (-) 0 (-) >0.05
rs2621337 chr6:32776649 HLA-DOB [-3891bp] C - 12 T vs. C 0.333 (T) 0.367 (T) >1 (-) 0 (-) >0.05
rs2621338 chr6:32776583 HLA-DOB [-3957bp] C - 12 A vs. G 0.342 (A) 0.367 (A) >1 (-) 0 (-) >0.05
rs6457680 chr6:32770688 HLA-DOB [-9852bp] C - 12 A vs. T 0.267 (A) 0.375 (A) <1 (-) 0 (-) >0.05
rs17034 chr6:32796521 TAP2 C - 12 T vs. C 0.292 (T) 0.35 (T) >1 (-) 0 (-) >0.05
rs2621366 chr6:32768980 HLA-DOB [-11560bp] C - 12 A vs. C 0.342 (A) 0.375 (A) >1 (-) 0 (-) >0.05
rs2857132 chr6:32776179 HLA-DOB [-4361bp] C - 12 A vs. G 0.342 (A) 0.367 (A) >1 (-) 0 (-) >0.05
rs2621333 chr6:32778263 HLA-DOB [-2277bp] C - 12 T vs. C 0.342 (T) 0.367 (T) >1 (-) 0 (-) >0.05
rs2857119 chr6:32777853 HLA-DOB [-2687bp] C - 12 T vs. C 0.342 (T) 0.367 (T) >1 (-) 0 (-) >0.05
rs2857120 chr6:32777605 HLA-DOB [-2935bp] C - 12 T vs. C 0.342 (C) 0.367 (C) <1 (-) 0 (-) >0.05
rs2857104 chr6:32790167 TAP2 C - 12 C vs. G 0.292 (G) 0.367 (G) <1 (-) 0 (-) >0.05
rs17220143 chr6:32787369 TAP2 [-2241bp] C - 11 A vs. G 0.017 (A) - >1 (-) 0 (-) >0.05
rs113936637 chr6:32750260 HLA-DQB2 [+18949bp] C - 12 A vs. T 0.083 (A) - >1 (-) 0 (-) >0.05
rs2857117 chr6:32778026 HLA-DOB [-2514bp] C - 12 T vs. C 0.325 (T) 0.367 (T) >1 (-) 0 (-) >0.05
rs2857118 chr6:32777900 HLA-DOB [-2640bp] C - 12 A vs. G 0.342 (A) 0.358 (A) >1 (-) 0 (-) >0.05
rs1800454 chr6:32800412 TAP2 C - 12 T vs. C 0.133 (T) 0.15 (T) >1 (-) 20 (-) >0.05
rs2621339 chr6:32775582 HLA-DOB [-4958bp] C - 12 A vs. C 0.342 (A) 0.367 (A) >1 (-) 0 (-) >0.05
rs2621347 chr6:32772669 HLA-DOB [-7871bp] C - 12 A vs. G 0.342 (A) 0.367 (A) >1 (-) 0 (-) >0.05
rs9501215 chr6:32772404 HLA-DOB [-8136bp] C - 12 T vs. G 0.342 (T) 0.358 (T) >1 (-) 0 (-) >0.05
rs55868116 chr6:32814667 PSMB9 C - 4 T vs. C - - <1 (-) 0 (-) >0.05
rs6920126 chr6:32763160 HLA-DOB [-17380bp] C - 6 T vs. G - - >1 (-) 50 (-) >0.05
rs2621321 chr6:32789480 TAP2 [-130bp] C - 12 A vs. G 0.292 (G) 0.292 (G) <1 (-) 0 (-) >0.05
rs2857106 chr6:32787570 TAP2 [-2040bp] C - 12 T vs. C 0.2 (C) 0.283 (C) <1 (-) 0 (-) >0.05
rs241425 chr6:32804909 TAP2 C - 12 A vs. G 0.45 (A) 0.392 (A) >1 (-) 15 (-) >0.05
rs9784758 chr6:32788511 TAP2 [-1099bp] C - 11 T vs. C 0.075 (C) 0.117 (C) >1 (-) 0 (-) >0.05
rs2857148 chr6:32768314 HLA-DOB [-12226bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs241438 chr6:32797620 TAP2 C - 12 T vs. C 0.375 (T) 0.492 (C) >1 (-) 22 (-) >0.05
rs10364 chr6:32780572 HLA-DOB C - 12 T vs. C 0.092 (C) 0.175 (C) <1 (-) 41 (-) >0.05
rs2857149 chr6:32768312 HLA-DOB [-12228bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs111980964 chr6:32841370 PSMB9 [+14008bp] C - 12 T vs. C 0.042 (T) 0.033 (T) >1 (-) 0 (-) >0.05
rs2621369 chr6:32768285 HLA-DOB [-12255bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs2061952 chr6:32785714 HLA-DOB [+889bp] C - 12 T vs. C 0.233 (C) 0.292 (C) <1 (-) 0 (-) >0.05

Association studies for this region [+]