TAP2, chr6:32789610-32806557 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9276627 chr6:32743835 HLA-DQB2 [+12524bp] All: C 103,235 14 C vs. T - - 1.16 (1.09-1.23) 3 (0-56) 4.81e-06
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2071475 chr6:32782387 HLA-DOB C - 12 A vs. G 0.233 (A) 0.292 (A) >1 (-) 0 (-) >0.05
rs2857212 chr6:32740411 HLA-DQB2 [+9100bp] C - 12 A vs. G 0.408 (G) 0.483 (G) <1 (-) 18 (-) >0.05
rs2239701 chr6:32805049 TAP2 C - 12 T vs. C 0.433 (C) 0.433 (C) >1 (-) 47 (-) >0.05
rs9276807 chr6:32780156 HLA-DOB [-384bp] C - 12 A vs. G 0.267 (A) 0.292 (A) <1 (-) 0 (-) >0.05
rs2621318 chr6:32796455 TAP2 C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs139113058 chr6:32747601 HLA-DQB2 [+16290bp] C - 11 A vs. G - - <1 (-) 0 (-) >0.05
rs9276831 chr6:32832033 PSMB9 [+4671bp] C - 12 A vs. G 0.108 (G) 0.125 (G) <1 (-) 0 (-) >0.05
rs113532053 chr6:32766158 HLA-DOB [-14382bp] C - 12 C vs. G 0.083 (C) - >1 (-) 0 (-) >0.05
rs149109754 chr6:32748285 HLA-DQB2 [+16974bp] C - 11 A vs. C - - >1 (-) 0 (-) >0.05
rs116456836 chr6:32767983 HLA-DOB [-12557bp] C - 12 A vs. G 0.092 (A) 0.225 (A) >1 (-) 37 (-) >0.05
rs2621423 chr6:32848820 PSMB9 [+21458bp] C - 3 T vs. C - 0.042 (C) <1 (-) 0 (-) >0.05
rs4947353 chr6:32777678 HLA-DOB [-2862bp] C - 12 A vs. G 0.092 (A) 0.192 (A) >1 (-) 36 (-) >0.05
rs1871664 chr6:32804881 TAP2 C - 12 A vs. G 0.45 (G) 0.408 (G) <1 (-) 2 (-) >0.05
rs1871665 chr6:32804879 TAP2 C - 12 T vs. C 0.45 (C) 0.408 (C) <1 (-) 1 (-) >0.05
rs241424 chr6:32804934 TAP2 C - 12 A vs. G 0.45 (A) 0.483 (A) <1 (-) 0 (-) >0.05
rs2244458 chr6:32853504 PSMB9 [+26142bp] C - 12 T vs. C - - >1 (-) 17 (-) >0.05
rs61318116 chr6:32770493 HLA-DOB [-10047bp] C - 9 T vs. C - - <1 (-) 0 (-) >0.05
rs117073325 chr6:32828669 PSMB9 [+1307bp] C - 9 A vs. C - 0.075 (A) <1 (-) 25 (-) >0.05
rs241437 chr6:32797684 TAP2 C - 12 A vs. G 0.417 (G) 0.475 (A) <1 (-) 14 (-) >0.05
rs11756846 chr6:32812580 PSMB9 C - 10 T vs. C - - >1 (-) 0 (-) >0.05
rs2859579 chr6:32784073 HLA-DOB C - 12 T vs. G 0.317 (T) 0.375 (T) >1 (-) 0 (-) >0.05
rs2621340 chr6:32775480 HLA-DOB [-5060bp] C - 12 T vs. C 0.342 (C) 0.367 (C) <1 (-) 4 (-) >0.05
rs241436 chr6:32797876 TAP2 C - 12 A vs. G 0.442 (G) 0.425 (A) <1 (-) 32 (-) >0.05
chr6:32745721 chr6:32745721 HLA-DQB2 [+14410bp] C - 3 T vs. C - - >1 (-) 0 (-) >0.05
rs2071474 chr6:32782582 HLA-DOB C - 12 T vs. C 0.325 (T) 0.367 (T) >1 (-) 0 (-) >0.05
rs2071470 chr6:32784753 HLA-DOB C - 12 T vs. C 0.325 (C) 0.367 (C) <1 (-) 0 (-) >0.05
rs113045309 chr6:32842230 PSMB9 [+14868bp] C - 12 T vs. G 0.042 (G) 0.033 (G) <1 (-) 0 (-) >0.05
rs9276785 chr6:32776292 HLA-DOB [-4248bp] C - 12 A vs. G 0.267 (A) 0.375 (A) <1 (-) 0 (-) >0.05
rs9276826 chr6:32830568 PSMB9 [+3206bp] C - 12 A vs. G 0.142 (G) - <1 (-) 0 (-) >0.05
rs241439 chr6:32797537 TAP2 C - 12 T vs. G 0.417 (G) 0.492 (T) <1 (-) 16 (-) >0.05
rs4947352 chr6:32777335 HLA-DOB [-3205bp] C - 12 A vs. G 0.092 (G) 0.175 (G) <1 (-) 38 (-) >0.05
rs6912414 chr6:32774465 HLA-DOB [-6075bp] C - 12 A vs. G 0.267 (A) 0.375 (A) <1 (-) 0 (-) >0.05
rs62396669 chr6:32748461 HLA-DQB2 [+17150bp] C - 12 C vs. G 0.083 (C) 0.225 (C) >1 (-) 36 (-) >0.05
rs118116221 chr6:32740782 HLA-DQB2 [+9471bp] C - 12 T vs. G - 0.058 (T) <1 (-) 0 (-) >0.05
rs6899878 chr6:32770530 HLA-DOB [-10010bp] C - 12 A vs. T 0.267 (A) 0.375 (A) <1 (-) 0 (-) >0.05
rs7382649 chr6:32776087 HLA-DOB [-4453bp] C - 12 T vs. C 0.267 (T) 0.383 (T) <1 (-) 0 (-) >0.05
rs9276609 chr6:32741487 HLA-DQB2 [+10176bp] C - 12 C vs. G 0.283 (G) 0.325 (G) >1 (-) 0 (-) >0.05
rs60825474 chr6:32851079 PSMB9 [+23717bp] C - 10 T vs. C - - <1 (-) 19 (-) >0.05
rs6457678 chr6:32768378 HLA-DOB [-12162bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs57963325 chr6:32849435 PSMB9 [+22073bp] C - 10 A vs. G - - <1 (-) 19 (-) >0.05
rs6457677 chr6:32766172 HLA-DOB [-14368bp] C - 12 A vs. T 0.258 (A) 0.383 (A) <1 (-) 0 (-) >0.05
rs6932969 chr6:32765671 HLA-DOB [-14869bp] C - 11 C vs. G 0.258 (G) 0.383 (G) >1 (-) 4 (-) >0.05
rs9276732 chr6:32765905 HLA-DOB [-14635bp] C - 11 A vs. T 0.267 (A) 0.383 (A) <1 (-) 4 (-) >0.05
rs7382714 chr6:32767496 HLA-DOB [-13044bp] C - 12 T vs. C 0.267 (C) 0.383 (C) >1 (-) 0 (-) >0.05
rs7748699 chr6:32773883 HLA-DOB [-6657bp] C - 12 C vs. G 0.267 (G) 0.383 (G) >1 (-) 0 (-) >0.05
rs7748681 chr6:32773858 HLA-DOB [-6682bp] C - 12 A vs. C 0.258 (A) 0.383 (A) <1 (-) 0 (-) >0.05
rs7382619 chr6:32775809 HLA-DOB [-4731bp] C - 12 T vs. C 0.267 (T) 0.358 (T) <1 (-) 0 (-) >0.05
rs4947351 chr6:32771144 HLA-DOB [-9396bp] C - 12 T vs. C - - >1 (-) 38 (-) >0.05
rs2621373 chr6:32765130 HLA-DOB [-15410bp] C - 11 T vs. C 0.342 (C) 0.367 (C) <1 (-) 0 (-) >0.05
rs7755858 chr6:32770111 HLA-DOB [-10429bp] C - 12 A vs. C 0.258 (C) 0.383 (C) >1 (-) 0 (-) >0.05

Association studies for this region [+]