TAP2, chr6:32789610-32806557 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9276627 chr6:32743835 HLA-DQB2 [+12524bp] All: C 103,235 14 C vs. T - - 1.16 (1.09-1.23) 3 (0-56) 4.81e-06
Meta_image?name=rs9276627

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
chr6:32745517 chr6:32745517 HLA-DQB2 [+14206bp] C - 4 A vs. C - - >1 (-) 0 (-) >0.05
rs6929904 chr6:32777319 HLA-DOB [-3221bp] C - 12 A vs. C 0.267 (C) 0.383 (C) >1 (-) 0 (-) >0.05
rs7381867 chr6:32777556 HLA-DOB [-2984bp] C - 12 T vs. G 0.267 (G) 0.383 (G) >1 (-) 0 (-) >0.05
rs7381376 chr6:32767673 HLA-DOB [-12867bp] C - 12 C vs. G 0.275 (G) 0.383 (G) >1 (-) 0 (-) >0.05
rs10484566 chr6:32835258 PSMB9 [+7896bp] C - 12 T vs. G 0.042 (G) 0.05 (G) <1 (-) 0 (-) >0.05
rs79771376 chr6:32746897 HLA-DQB2 [+15586bp] C - 12 A vs. G 0.092 (G) 0.183 (G) <1 (-) 36 (-) >0.05
rs9276760 chr6:32773102 HLA-DOB [-7438bp] C - 12 T vs. G 0.267 (T) 0.392 (T) <1 (-) 0 (-) >0.05
rs9276763 chr6:32773262 HLA-DOB [-7278bp] C - 12 A vs. G 0.267 (A) 0.383 (A) <1 (-) 0 (-) >0.05
rs4947348 chr6:32747410 HLA-DQB2 [+16099bp] C - 12 T vs. G 0.092 (G) 0.183 (G) <1 (-) 35 (-) >0.05
rs9276762 chr6:32773202 HLA-DOB [-7338bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs7740209 chr6:32767432 HLA-DOB [-13108bp] C - 12 T vs. C 0.267 (T) 0.383 (T) <1 (-) 0 (-) >0.05
rs112789728 chr6:32846335 PSMB9 [+18973bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs6919657 chr6:32770443 HLA-DOB [-10097bp] C - 12 A vs. C 0.275 (C) 0.383 (C) >1 (-) 0 (-) >0.05
rs6899857 chr6:32770482 HLA-DOB [-10058bp] C - 12 T vs. C 0.267 (C) 0.383 (C) >1 (-) 0 (-) >0.05
rs7383606 chr6:32766593 HLA-DOB [-13947bp] C - 12 T vs. C 0.267 (T) 0.383 (T) <1 (-) 0 (-) >0.05
rs9276734 chr6:32766854 HLA-DOB [-13686bp] C - 12 A vs. G 0.267 (A) 0.383 (A) <1 (-) 0 (-) >0.05
rs74855830 chr6:32832324 PSMB9 [+4962bp] C - 12 A vs. G 0.042 (A) - >1 (-) 0 (-) >0.05
rs7382679 chr6:32767170 HLA-DOB [-13370bp] C - 12 T vs. G 0.267 (G) 0.383 (G) >1 (-) 0 (-) >0.05
rs7383562 chr6:32766345 HLA-DOB [-14195bp] C - 12 A vs. G 0.267 (G) 0.383 (G) >1 (-) 0 (-) >0.05
rs7383602 chr6:32766433 HLA-DOB [-14107bp] C - 12 C vs. G 0.267 (C) 0.383 (C) <1 (-) 0 (-) >0.05
rs9276745 chr6:32771411 HLA-DOB [-9129bp] C - 12 T vs. G 0.267 (T) 0.375 (T) <1 (-) 0 (-) >0.05
rs1383261 chr6:32765451 HLA-DOB [-15089bp] C - 12 T vs. C 0.267 (T) 0.383 (T) <1 (-) 0 (-) >0.05
rs9276778 chr6:32775312 HLA-DOB [-5228bp] C - 12 A vs. G 0.267 (A) 0.383 (A) <1 (-) 0 (-) >0.05
rs41316552 chr6:32799923 TAP2 C - 12 T vs. C 0.133 (C) 0.192 (C) <1 (-) 9 (-) >0.05
rs17213630 chr6:32775253 HLA-DOB [-5287bp] C - 12 A vs. G 0.092 (A) 0.2 (A) >1 (-) 39 (-) >0.05
rs17219974 chr6:32762756 HLA-DOB [-17784bp] C - 10 A vs. T 0.025 (T) - >1 (-) 0 (-) >0.05
rs70996743 chr6:32796466 TAP2 C - 12 A vs. C - - >1 (-) 0 (-) >0.05
rs7766964 chr6:32852928 PSMB9 [+25566bp] C - 11 A vs. T 0.058 (T) 0.158 (T) <1 (-) 0 (-) >0.05
rs9276749 chr6:32771964 HLA-DOB [-8576bp] C - 12 T vs. G 0.267 (G) 0.375 (G) >1 (-) 0 (-) >0.05
rs9276726 chr6:32763888 HLA-DOB [-16652bp] C - 12 T vs. C 0.267 (C) 0.375 (C) >1 (-) 0 (-) >0.05
rs7383081 chr6:32777540 HLA-DOB [-3000bp] C - 12 T vs. C 0.267 (T) 0.375 (T) <1 (-) 0 (-) >0.05
rs1054684 chr6:32776921 HLA-DOB [-3619bp] C - 12 T vs. C 0.092 (C) - >1 (-) 17 (-) >0.05
rs7381315 chr6:32767251 HLA-DOB [-13289bp] C - 12 A vs. G 0.267 (G) 0.383 (G) >1 (-) 0 (-) >0.05
rs1894406 chr6:32787056 HLA-DOB [+2231bp] C - 12 T vs. C 0.342 (T) 0.475 (T) >1 (-) 0 (-) >0.05
rs140017767 chr6:32813576 PSMB9 C - 10 T vs. G - - <1 (-) 57 (-) >0.05
rs7767892 chr6:32853373 PSMB9 [+26011bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs6917611 chr6:32774954 HLA-DOB [-5586bp] C - 12 C vs. G 0.358 (C) 0.433 (C) <1 (-) 0 (-) >0.05
rs2621432 chr6:32832255 PSMB9 [+4893bp] C - 12 A vs. G 0.05 (A) - <1 (-) 9 (-) >0.05
rs2857223 chr6:32832256 PSMB9 [+4894bp] C - 12 A vs. C 0.05 (A) - <1 (-) 9 (-) >0.05
rs61130305 chr6:32828141 PSMB9 [+779bp] C - 12 A vs. G 0.042 (A) 0.067 (A) >1 (-) 0 (-) >0.05
rs2228106 chr6:32816448 PSMB9 C - 10 A vs. G 0.008 (A) - >1 (-) 0 (-) >0.05
rs150909029 chr6:32772903 HLA-DOB [-7637bp] C - 11 A vs. G - - >1 (-) 0 (-) >0.05
rs9276733 chr6:32766026 HLA-DOB [-14514bp] C - 12 A vs. G 0.267 (G) 0.358 (G) >1 (-) 0 (-) >0.05
rs9378275 chr6:32803999 TAP2 C - 11 A vs. T 0.008 (T) 0.1 (T) <1 (-) 0 (-) >0.05
rs6912002 chr6:32765268 HLA-DOB [-15272bp] C - 12 T vs. C 0.267 (C) 0.383 (C) >1 (-) 0 (-) >0.05
rs6937723 chr6:32766003 HLA-DOB [-14537bp] C - 12 A vs. T 0.267 (T) 0.392 (T) >1 (-) 0 (-) >0.05
rs149824312 chr6:32813731 PSMB9 C - 9 C vs. G - - <1 (-) 65 (-) >0.05
rs2071469 chr6:32784783 HLA-DOB C - 12 T vs. C 0.375 (T) 0.492 (T) >1 (-) 0 (-) >0.05
rs117535069 chr6:32833984 PSMB9 [+6622bp] C - 11 T vs. C - 0.058 (T) <1 (-) 0 (-) >0.05
rs6937875 chr6:32766041 HLA-DOB [-14499bp] C - 12 T vs. C 0.267 (T) 0.392 (T) <1 (-) 0 (-) >0.05

Association studies for this region [+]