TAP2, chr6:32789610-32806557 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9276627 chr6:32743835 HLA-DQB2 [+12524bp] All: C 103,235 14 C vs. T - - 1.16 (1.09-1.23) 3 (0-56) 4.81e-06
Meta_image?name=rs9276627

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs115303597 chr6:32743648 HLA-DQB2 [+12337bp] C - 12 T vs. C 0.025 (T) - <1 (-) 0 (-) >0.05
rs116039340 chr6:32849821 PSMB9 [+22459bp] C - 12 T vs. C 0.033 (T) 0.042 (T) >1 (-) 0 (-) >0.05
rs151102334 chr6:32743495 HLA-DQB2 [+12184bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs7767277 chr6:32853042 PSMB9 [+25680bp] C - 12 A vs. C 0.058 (A) 0.175 (A) >1 (-) 0 (-) >0.05
rs4148881 chr6:32818432 PSMB9 C - 12 A vs. C 0.033 (A) 0.033 (A) >1 (-) 0 (-) >0.05
rs114912314 chr6:32830958 PSMB9 [+3596bp] C - 12 T vs. C 0.042 (T) 0.042 (T) >1 (-) 0 (-) >0.05
rs62396666 chr6:32740618 HLA-DQB2 [+9307bp] C - 11 A vs. G - - >1 (-) 1 (-) >0.05
rs9368744 chr6:32798299 TAP2 C - 11 T vs. C - 0.092 (T) >1 (-) 0 (-) >0.05
rs138082244 chr6:32801325 TAP2 C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs7768158 chr6:32853408 PSMB9 [+26046bp] C - 12 T vs. G - - >1 (-) 0 (-) >0.05
rs1124799 chr6:32852569 PSMB9 [+25207bp] C - 12 A vs. T 0.367 (A) 0.392 (A) >1 (-) 7 (-) >0.05
rs12529605 chr6:32852795 PSMB9 [+25433bp] C - 12 A vs. C 0.042 (C) 0.175 (C) <1 (-) 0 (-) >0.05
rs150463293 chr6:32755842 HLA-DQB2 [+24531bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs114311872 chr6:32812736 PSMB9 C - 12 T vs. C 0.017 (T) 0.033 (T) >1 (-) 0 (-) >0.05
rs2395269 chr6:32817774 PSMB9 C - 12 T vs. G 0.1 (G) 0.192 (G) <1 (-) 0 (-) >0.05
rs10046277 chr6:32855081 PSMB9 [+27719bp] C - 12 T vs. C 0.075 (T) 0.058 (T) >1 (-) 0 (-) >0.05
rs36229526 chr6:32820656 PSMB9 C - 12 T vs. G 0.058 (T) - >1 (-) 0 (-) >0.05
rs113206908 chr6:32818030 PSMB9 C - 11 T vs. C 0.017 (C) - <1 (-) 28 (-) >0.05
rs6930981 chr6:32826450 PSMB9 C - 12 T vs. C 0.367 (C) 0.333 (C) <1 (-) 13 (-) >0.05
rs118033438 chr6:32753873 HLA-DQB2 [+22562bp] C - 6 A vs. T - 0.042 (A) >1 (-) 0 (-) >0.05
rs4959117 chr6:32845634 PSMB9 [+18272bp] C - 11 A vs. T 0.3 (A) 0.25 (A) >1 (-) 0 (-) >0.05
rs11967235 chr6:32781433 HLA-DOB C - 12 T vs. C 0.017 (T) - >1 (-) 0 (-) >0.05
rs77227620 chr6:32819751 PSMB9 C - 12 T vs. G 0.075 (T) 0.175 (T) >1 (-) 0 (-) >0.05
rs6938130 chr6:32831247 PSMB9 [+3885bp] C - 12 A vs. T 0.35 (T) 0.325 (T) <1 (-) 0 (-) >0.05
rs113194406 chr6:32840222 PSMB9 [+12860bp] C - 12 A vs. G 0.042 (A) - >1 (-) 0 (-) >0.05
rs112805625 chr6:32853078 PSMB9 [+25716bp] C - 12 T vs. C - - >1 (-) 43 (-) >0.05
rs1029295 chr6:32856482 PSMB9 [+29120bp] C - 12 T vs. C 0.075 (C) 0.058 (C) <1 (-) 0 (-) >0.05
rs4148879 chr6:32819478 PSMB9 C - 12 A vs. G 0.075 (A) 0.175 (A) >1 (-) 0 (-) >0.05
rs75008053 chr6:32853117 PSMB9 [+25755bp] C - 12 A vs. C - - <1 (-) 43 (-) >0.05
rs1383268 chr6:32833366 PSMB9 [+6004bp] C - 12 A vs. C 0.342 (A) 0.192 (A) >1 (-) 5 (-) >0.05
rs41317090 chr6:32802354 TAP2 C - 11 A vs. C 0.05 (A) - <1 (-) 31 (-) >0.05
rs1383270 chr6:32833256 PSMB9 [+5894bp] C - 12 A vs. G 0.342 (A) 0.333 (A) >1 (-) 4 (-) >0.05
rs241423 chr6:32818010 PSMB9 C - 12 A vs. G 0.05 (A) - <1 (-) 32 (-) >0.05
rs1871667 chr6:32834229 PSMB9 [+6867bp] C - 12 A vs. G 0.35 (G) 0.325 (G) <1 (-) 6 (-) >0.05
rs10046115 chr6:32855174 PSMB9 [+27812bp] C - 12 A vs. G 0.075 (G) 0.058 (G) <1 (-) 0 (-) >0.05
rs7740137 chr6:32855275 PSMB9 [+27913bp] C - 12 A vs. G 0.075 (G) 0.058 (G) <1 (-) 0 (-) >0.05
rs7760573 chr6:32855347 PSMB9 [+27985bp] C - 12 T vs. C 0.075 (C) 0.058 (C) <1 (-) 0 (-) >0.05
rs7740473 chr6:32855540 PSMB9 [+28178bp] C - 12 A vs. G 0.075 (G) 0.058 (G) <1 (-) 0 (-) >0.05
rs6457688 chr6:32855624 PSMB9 [+28262bp] C - 12 A vs. G 0.075 (G) 0.058 (G) <1 (-) 0 (-) >0.05
rs1383267 chr6:32833646 PSMB9 [+6284bp] C - 12 A vs. G 0.35 (A) 0.325 (A) >1 (-) 6 (-) >0.05
rs7760732 chr6:32855458 PSMB9 [+28096bp] C - 12 T vs. C 0.075 (C) 0.042 (C) <1 (-) 0 (-) >0.05
rs17617115 chr6:32853516 PSMB9 [+26154bp] C - 12 A vs. G 0.058 (A) - >1 (-) 0 (-) >0.05
rs1383269 chr6:32833296 PSMB9 [+5934bp] C - 12 A vs. G 0.392 (G) 0.325 (G) <1 (-) 11 (-) >0.05
rs56157202 chr6:32823764 PSMB9 C - 10 A vs. G 0.008 (G) - <1 (-) 3 (-) >0.05
rs6457689 chr6:32855683 PSMB9 [+28321bp] C - 12 T vs. C 0.075 (T) 0.058 (T) >1 (-) 0 (-) >0.05
rs9276818 chr6:32828248 PSMB9 [+886bp] C - 12 T vs. G 0.35 (G) 0.325 (G) <1 (-) 3 (-) >0.05
rs241428 chr6:32804070 TAP2 C - 12 T vs. G 0.033 (G) - >1 (-) 28 (-) >0.05
rs9276827 chr6:32830904 PSMB9 [+3542bp] C - 12 A vs. G 0.35 (A) 0.325 (A) >1 (-) 4 (-) >0.05
rs1963772 chr6:32856445 PSMB9 [+29083bp] C - 12 A vs. G 0.067 (G) 0.05 (G) <1 (-) 0 (-) >0.05
rs1029296 chr6:32856381 PSMB9 [+29019bp] C - 12 T vs. C 0.075 (C) 0.05 (C) <1 (-) 0 (-) >0.05

Association studies for this region [+]