TMEM239, chr20:2795614-2800930 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs7268763 chr20:2828596 VPS16 All: C 108,990 15 G vs. A 0.292 (G) 0.467 (G) 0.93 (0.90-0.96) 0 (0-37) 9.32e-05
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs7268763 chr20:2828596 VPS16 All: C 108,990 15 G vs. A 0.292 (G) 0.467 (G) 0.93 (0.90-0.96) 0 (0-37) 9.32e-05
rs16988130 chr20:2824849 VPS16 All: C 108,990 15 G vs. A 0.275 (G) 0.367 (G) 0.93 (0.90-0.97) 0 (0-35) 2.71e-04
rs6132979 chr20:2833939 VPS16 All: C 108,990 15 A vs. G 0.275 (A) 0.342 (A) 0.94 (0.90-0.97) 0 (0-32) 5.15e-04
rs6115678 chr20:2791995 TMEM239 [-3619bp] C - 13 A vs. C 0.4 (A) 0.375 (C) <1 (-) 0 (-) <0.05
rs11697539 chr20:2823247 VPS16 C - 13 T vs. C 0.242 (T) 0.375 (T) <1 (-) 0 (-) <0.05
rs873711 chr20:2827468 VPS16 C - 13 A vs. G 0.375 (A) 0.325 (G) <1 (-) 26 (-) <0.05
rs2325971 chr20:2826477 VPS16 C - 13 T vs. C 0.375 (T) 0.325 (C) <1 (-) 26 (-) <0.05
rs6084183 chr20:2811868 PCED1A [-4092bp] C - 13 T vs. C - - >1 (-) 12 (-) <0.05
rs6051437 chr20:2833779 VPS16 C - 13 A vs. G 0.375 (A) 0.342 (G) <1 (-) 24 (-) <0.05
rs4813619 chr20:2815715 PCED1A [-245bp] C - 13 T vs. G 0.492 (G) 0.117 (G) <1 (-) 12 (-) <0.05
rs6037423 chr20:2833990 VPS16 C - 13 A vs. G - - <1 (-) 21 (-) <0.05
rs6138912 chr20:2832090 VPS16 C - 13 A vs. G 0.258 (G) 0.367 (G) >1 (-) 0 (-) <0.05
rs6051425 chr20:2815318 PCED1A [-642bp] C - 13 C vs. G 0.492 (C) 0.117 (C) >1 (-) 11 (-) <0.05
rs751899 chr20:2818801 PCED1A C - 13 T vs. C 0.483 (T) 0.117 (T) >1 (-) 12 (-) <0.05
rs2325970 chr20:2818480 PCED1A C - 13 A vs. G 0.5 (A) 0.117 (A) >1 (-) 12 (-) <0.05
rs4815549 chr20:2830838 VPS16 C - 13 A vs. G - - >1 (-) 15 (-) <0.05
rs6051444 chr20:2836264 VPS16 C - 13 T vs. C 0.375 (T) 0.333 (C) <1 (-) 23 (-) <0.05
rs6051445 chr20:2836657 VPS16 C - 13 A vs. T 0.375 (A) 0.325 (T) <1 (-) 23 (-) <0.05
rs6051446 chr20:2836680 VPS16 C - 13 T vs. G 0.367 (G) 0.325 (T) >1 (-) 23 (-) <0.05
rs6132968 chr20:2783121 CPXM1 [+1838bp] C - 13 A vs. G 0.392 (G) 0.425 (A) >1 (-) 0 (-) <0.05
rs4364082 chr20:2836257 VPS16 C - 13 T vs. C 0.367 (C) 0.325 (T) >1 (-) 23 (-) <0.05
rs6084176 chr20:2784406 CPXM1 [+3123bp] C - 13 A vs. C 0.392 (A) 0.417 (C) <1 (-) 0 (-) <0.05
rs6051432 chr20:2832510 VPS16 C - 13 A vs. G - - >1 (-) 24 (-) <0.05
rs6037416 chr20:2784925 CPXM1 [+3642bp] C - 13 A vs. G 0.392 (G) 0.417 (A) >1 (-) 0 (-) <0.05
rs6037425 chr20:2837379 VPS16 C - 13 C vs. G 0.375 (G) 0.325 (C) >1 (-) 22 (-) <0.05
rs6051447 chr20:2836919 VPS16 C - 13 A vs. G 0.375 (A) 0.325 (G) <1 (-) 23 (-) <0.05
rs6037426 chr20:2837437 VPS16 C - 13 T vs. G 0.383 (T) 0.325 (G) <1 (-) 23 (-) <0.05
rs11087556 chr20:2785598 CPXM1 [+4315bp] C - 13 A vs. G 0.392 (G) 0.417 (A) >1 (-) 0 (-) <0.05
rs2875808 chr20:2834802 VPS16 C - 13 A vs. C 0.375 (C) 0.333 (A) >1 (-) 17 (-) <0.05
rs6138920 chr20:2842102 VPS16 C - 13 T vs. C 0.425 (C) 0.325 (T) >1 (-) 0 (-) <0.05
rs6051441 chr20:2835407 VPS16 C - 13 A vs. G - - >1 (-) 0 (-) <0.05
rs4274657 chr20:2835731 VPS16 C - 13 T vs. C 0.367 (T) 0.333 (C) <1 (-) 24 (-) <0.05
rs73083225 chr20:2823380 VPS16 C - 13 A vs. C - - <1 (-) 0 (-) <0.05
rs628248 chr20:2848825 PTPRA C - 13 T vs. C 0.483 (T) 0.125 (T) >1 (-) 17 (-) <0.05
rs677344 chr20:2846289 VPS16 C - 13 A vs. G 0.483 (G) 0.117 (G) <1 (-) 13 (-) <0.05
rs2325975 chr20:2837763 VPS16 C - 13 A vs. T - - <1 (-) 20 (-) <0.05
rs11697820 chr20:2781441 CPXM1 [+158bp] C - 13 T vs. C 0.408 (C) 0.4 (T) >1 (-) 0 (-) <0.05
rs2325976 chr20:2837772 VPS16 C - 13 T vs. C - - <1 (-) 20 (-) <0.05
rs742707 chr20:2777828 CPXM1 C - 13 T vs. G 0.4 (G) 0.433 (T) >1 (-) 0 (-) <0.05
rs1854474 chr20:2835756 VPS16 C - 13 T vs. G - - >1 (-) 24 (-) <0.05
rs1854475 chr20:2835764 VPS16 C - 13 C vs. G - - <1 (-) 25 (-) <0.05
rs215519 chr20:2758377 CPXM1 [-16338bp] C - 13 A vs. G 0.483 (A) 0.175 (G) <1 (-) 0 (-) <0.05
rs632080 chr20:2843053 VPS16 C - 13 A vs. G 0.483 (A) 0.117 (A) >1 (-) 14 (-) <0.05
rs215517 chr20:2756896 EBF4 [+16143bp] C - 13 T vs. C 0.483 (T) 0.158 (C) <1 (-) 0 (-) <0.05
rs6051431 chr20:2831990 VPS16 C - 13 T vs. C - 0.4 (C) <1 (-) 25 (-) <0.05
rs6051434 chr20:2833237 VPS16 C - 13 T vs. G 0.358 (G) 0.4 (T) >1 (-) 25 (-) <0.05
rs6138919 chr20:2838513 VPS16 C - 13 T vs. C - - <1 (-) 0 (-) <0.05
rs215518 chr20:2757537 EBF4 [+16784bp] C - 13 A vs. G 0.483 (G) 0.175 (A) >1 (-) 0 (-) <0.05
rs6138921 chr20:2849232 PTPRA C - 13 A vs. G 0.267 (G) 0.308 (G) >1 (-) 0 (-) <0.05
rs6037422 chr20:2832565 VPS16 C - 13 A vs. G 0.375 (A) - <1 (-) 25 (-) <0.05

Association studies for this region [+]