VPS16, chr20:2821349-2847378 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs7268763 chr20:2828596 VPS16 All: C 108,990 15 G vs. A 0.292 (G) 0.467 (G) 0.93 (0.90-0.96) 0 (0-37) 9.32e-05
Meta_image?name=rs7268763

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs742707 chr20:2777828 CPXM1 C - 13 T vs. G 0.4 (G) 0.433 (T) >1 (-) 0 (-) <0.05
rs148078 chr20:2861603 PTPRA C - 13 A vs. G - - >1 (-) 19 (-) <0.05
rs1016754 chr20:2889782 PTPRA C - 13 A vs. G 0.442 (A) 0.408 (G) <1 (-) 0 (-) <0.05
rs6084195 chr20:2889235 PTPRA C - 13 A vs. T 0.433 (A) 0.408 (T) <1 (-) 0 (-) <0.05
rs1161237 chr20:2863980 PTPRA C - 13 A vs. G 0.5 (A) 0.108 (A) >1 (-) 20 (-) <0.05
rs1854474 chr20:2835756 VPS16 C - 13 T vs. G - - >1 (-) 24 (-) <0.05
rs67724953 chr20:2879026 PTPRA C - 13 A vs. C 0.433 (C) 0.417 (A) >1 (-) 0 (-) <0.05
rs1854475 chr20:2835764 VPS16 C - 13 C vs. G - - <1 (-) 25 (-) <0.05
rs1161231 chr20:2891202 PTPRA C - 13 T vs. C 0.458 (T) - >1 (-) 14 (-) <0.05
rs632080 chr20:2843053 VPS16 C - 13 A vs. G 0.483 (A) 0.117 (A) >1 (-) 14 (-) <0.05
rs672386 chr20:2885193 PTPRA C - 13 T vs. C 0.492 (C) - <1 (-) 17 (-) <0.05
rs6051431 chr20:2831990 VPS16 C - 13 T vs. C - 0.4 (C) <1 (-) 25 (-) <0.05
rs6051434 chr20:2833237 VPS16 C - 13 T vs. G 0.358 (G) 0.4 (T) >1 (-) 25 (-) <0.05
rs150250920 chr20:2879135 PTPRA C - 10 T vs. C - - >1 (-) 0 (-) <0.05
rs6138919 chr20:2838513 VPS16 C - 13 T vs. C - - <1 (-) 0 (-) <0.05
rs570673 chr20:2871015 PTPRA C - 13 C vs. G 0.483 (G) 0.117 (G) <1 (-) 18 (-) <0.05
rs6138921 chr20:2849232 PTPRA C - 13 A vs. G 0.267 (G) 0.308 (G) >1 (-) 0 (-) <0.05
rs6037422 chr20:2832565 VPS16 C - 13 A vs. G 0.375 (A) - <1 (-) 25 (-) <0.05
rs4815550 chr20:2833458 VPS16 C - 13 A vs. G 0.358 (G) 0.4 (A) >1 (-) 25 (-) <0.05
rs149427057 chr20:2879285 PTPRA C - 10 C vs. G - - >1 (-) 0 (-) <0.05
rs77852816 chr20:2879868 PTPRA C - 10 A vs. G - 0.083 (A) <1 (-) 0 (-) <0.05
rs75592212 chr20:2879869 PTPRA C - 10 T vs. C - 0.083 (T) <1 (-) 0 (-) <0.05
rs4815551 chr20:2833577 VPS16 C - 13 T vs. C 0.358 (T) 0.417 (C) <1 (-) 20 (-) <0.05
rs4815552 chr20:2833578 VPS16 C - 13 A vs. G 0.358 (G) 0.417 (A) >1 (-) 20 (-) <0.05
rs6138928 chr20:2873606 PTPRA C - 13 T vs. G 0.442 (G) 0.417 (T) >1 (-) 0 (-) <0.05
rs6138915 chr20:2833964 VPS16 C - 13 A vs. G - - >1 (-) 25 (-) <0.05
rs585035 chr20:2872860 PTPRA C - 13 T vs. C - - >1 (-) 18 (-) <0.05
rs127073 chr20:2787994 CPXM1 [+6711bp] C - 13 A vs. G 0.425 (A) 0.4 (G) <1 (-) 0 (-) <0.05
rs6051440 chr20:2834555 VPS16 C - 13 T vs. G - - <1 (-) 24 (-) <0.05
rs2325972 chr20:2834975 VPS16 C - 13 C vs. G 0.375 (C) 0.408 (G) <1 (-) 24 (-) <0.05
rs85166 chr20:2788274 CPXM1 [+6991bp] C - 13 T vs. C 0.417 (C) 0.4 (T) >1 (-) 0 (-) <0.05
rs6051439 chr20:2834433 VPS16 C - 13 T vs. C - - <1 (-) 23 (-) <0.05
rs215556 chr20:2788897 TMEM239 [-6717bp] C - 13 A vs. G - - <1 (-) 0 (-) <0.05
rs11087558 chr20:2877622 PTPRA C - 13 A vs. T 0.267 (T) 0.342 (T) >1 (-) 0 (-) <0.05
rs6051449 chr20:2842685 VPS16 C - 13 A vs. C 0.417 (C) 0.433 (A) >1 (-) 0 (-) <0.05
rs57368602 chr20:2873169 PTPRA C - 10 A vs. G 0.008 (A) 0.083 (A) <1 (-) 0 (-) <0.05
rs6138930 chr20:2874429 PTPRA C - 13 T vs. C 0.267 (T) 0.342 (T) <1 (-) 0 (-) <0.05
rs2875807 chr20:2834801 VPS16 C - 13 T vs. G 0.358 (T) 0.408 (G) <1 (-) 18 (-) <0.05
rs6051456 chr20:2856288 PTPRA C - 13 A vs. T 0.408 (A) 0.417 (T) <1 (-) 0 (-) <0.05
rs117321792 chr20:2868750 PTPRA C - 10 T vs. C - 0.083 (T) <1 (-) 1 (-) <0.05
rs78309811 chr20:2870295 PTPRA C - 10 C vs. G 0.008 (G) 0.083 (G) >1 (-) 4 (-) <0.05
rs6084177 chr20:2791245 TMEM239 [-4369bp] C - 13 A vs. G 0.383 (A) 0.4 (A) <1 (-) 0 (-) <0.05
rs730819 chr20:2845130 VPS16 C - 13 A vs. G 0.425 (A) 0.433 (G) <1 (-) 0 (-) <0.05
rs146614229 chr20:2888297 PTPRA C - 10 T vs. C - - <1 (-) 5 (-) <0.05
rs145816643 chr20:2888128 PTPRA C - 10 T vs. C - - >1 (-) 5 (-) <0.05
rs147443982 chr20:2891301 PTPRA C - 10 A vs. G - - <1 (-) 5 (-) <0.05
rs6132988 chr20:2890245 PTPRA C - 10 A vs. G - 0.067 (G) >1 (-) 5 (-) <0.05
rs117425855 chr20:2892413 PTPRA C - 10 C vs. G 0.008 (C) 0.083 (C) <1 (-) 5 (-) <0.05
rs6138926 chr20:2865742 PTPRA C - 13 T vs. C 0.408 (T) 0.417 (C) <1 (-) 0 (-) <0.05
rs144331209 chr20:2891992 PTPRA C - 10 A vs. C - - >1 (-) 5 (-) <0.05

Association studies for this region [+]