VPS16, chr20:2821349-2847378 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs7268763 chr20:2828596 VPS16 All: C 108,990 15 G vs. A 0.292 (G) 0.467 (G) 0.93 (0.90-0.96) 0 (0-37) 9.32e-05
Meta_image?name=rs7268763

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs34211052 chr20:2780683 CPXM1 C - 13 A vs. G 0.1 (A) 0.225 (A) <1 (-) 0 (-) <0.05
rs61386698 chr20:2856734 PTPRA C - 10 T vs. G 0.008 (G) 0.083 (G) >1 (-) 0 (-) <0.05
rs61091656 chr20:2860223 PTPRA C - 10 C vs. G 0.017 (G) 0.108 (G) >1 (-) 0 (-) >0.05
rs13043754 chr20:2783771 CPXM1 [+2488bp] C - 13 A vs. G 0.117 (G) 0.417 (G) >1 (-) 0 (-) >0.05
rs73083219 chr20:2818348 PCED1A C - 6 T vs. C 0.008 (T) - <1 (-) 0 (-) >0.05
rs6138918 chr20:2837058 VPS16 C - 10 A vs. G 0.017 (G) 0.075 (G) >1 (-) 0 (-) >0.05
rs2143635 chr20:2793063 TMEM239 [-2551bp] C - 13 T vs. C 0.1 (C) 0.183 (C) >1 (-) 0 (-) >0.05
rs6138922 chr20:2851665 PTPRA C - 10 T vs. C 0.008 (T) 0.075 (T) <1 (-) 0 (-) >0.05
rs11699077 chr20:2829158 VPS16 C - 13 A vs. G 0.125 (G) 0.367 (G) >1 (-) 0 (-) >0.05
rs2073130 chr20:2778459 CPXM1 C - 13 A vs. G 0.092 (A) 0.225 (A) <1 (-) 0 (-) >0.05
rs2297048 chr20:2840929 VPS16 C - 10 A vs. G 0.008 (A) 0.075 (A) <1 (-) 0 (-) >0.05
rs142167213 chr20:2783873 CPXM1 [+2590bp] C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs146219204 chr20:2835301 VPS16 C - 10 A vs. G - - <1 (-) 0 (-) >0.05
rs6138913 chr20:2832136 VPS16 C - 10 T vs. C - - <1 (-) 0 (-) >0.05
rs6132980 chr20:2833977 VPS16 C - 10 T vs. G - - <1 (-) 0 (-) >0.05
rs6138914 chr20:2833634 VPS16 C - 10 T vs. G 0.017 (T) 0.067 (T) <1 (-) 0 (-) >0.05
rs117259301 chr20:2844429 VPS16 C - 10 A vs. G 0.008 (A) 0.075 (A) <1 (-) 0 (-) >0.05
rs11696181 chr20:2791368 TMEM239 [-4246bp] C - 13 T vs. G - - <1 (-) 0 (-) >0.05
rs13036662 chr20:2784053 CPXM1 [+2770bp] C - 13 A vs. G 0.092 (A) 0.208 (A) <1 (-) 0 (-) >0.05
rs2274671 chr20:2844911 VPS16 C - 10 T vs. C - 0.1 (T) <1 (-) 6 (-) >0.05
rs11698364 chr20:2773294 CPXM1 [-1421bp] C - 13 A vs. G 0.092 (G) 0.225 (G) >1 (-) 0 (-) >0.05
rs2325974 chr20:2837592 VPS16 C - 13 T vs. C 0.375 (C) 0.325 (T) >1 (-) 19 (-) >0.05
rs6132975 chr20:2815760 PCED1A [-200bp] C - 13 C vs. G 0.35 (C) 0.442 (G) <1 (-) 0 (-) >0.05
rs1329269 chr20:2810098 PCED1A [-5862bp] C - 13 T vs. C 0.4 (T) 0.333 (C) <1 (-) 0 (-) >0.05
rs6132978 chr20:2826321 VPS16 C - 10 A vs. G 0.017 (G) 0.075 (G) >1 (-) 0 (-) >0.05
rs6132977 chr20:2825972 VPS16 C - 10 A vs. G 0.017 (A) 0.075 (A) <1 (-) 0 (-) >0.05
rs6138908 chr20:2829967 VPS16 C - 9 A vs. G 0.008 (A) - <1 (-) 0 (-) >0.05
rs6132976 chr20:2825051 VPS16 C - 10 A vs. G 0.017 (A) 0.075 (A) <1 (-) 0 (-) >0.05
rs12625619 chr20:2796007 TMEM239 C - 13 A vs. G 0.092 (A) 0.142 (A) <1 (-) 0 (-) >0.05
rs35416652 chr20:2773077 CPXM1 [-1638bp] C - 13 T vs. C 0.083 (C) 0.225 (C) >1 (-) 0 (-) >0.05
rs6138907 chr20:2829217 VPS16 C - 10 A vs. G 0.017 (A) 0.075 (A) <1 (-) 0 (-) >0.05
rs6132981 chr20:2843801 VPS16 C - 10 A vs. G 0.008 (A) 0.075 (A) <1 (-) 11 (-) >0.05
rs6051457 chr20:2868716 PTPRA C - 12 A vs. G - 0.083 (A) <1 (-) 20 (-) >0.05
rs114785756 chr20:2825807 VPS16 C - 8 C vs. G 0.017 (C) 0.075 (C) <1 (-) 0 (-) >0.05
rs117000514 chr20:2868074 PTPRA C - 11 A vs. G 0.008 (A) 0.083 (A) <1 (-) 25 (-) >0.05
rs114796685 chr20:2865983 PTPRA C - 11 T vs. G 0.017 (T) 0.108 (T) <1 (-) 28 (-) >0.05
rs117709906 chr20:2834086 VPS16 C - 10 A vs. G - 0.075 (G) >1 (-) 3 (-) >0.05
rs1555667 chr20:2847384 PTPRA C - 9 T vs. C 0.008 (T) 0.067 (T) <1 (-) 0 (-) >0.05
rs7262267 chr20:2865976 PTPRA C - 12 A vs. G 0.408 (G) 0.433 (A) >1 (-) 0 (-) >0.05
rs2073127 chr20:2796133 TMEM239 C - 13 A vs. G 0.283 (A) 0.325 (A) <1 (-) 0 (-) >0.05
rs8123040 chr20:2792926 TMEM239 [-2688bp] C - 7 A vs. C 0.017 (C) 0.2 (C) >1 (-) 0 (-) >0.05
rs11697717 chr20:2771921 CPXM1 [-2794bp] C - 13 T vs. C 0.075 (C) 0.225 (C) >1 (-) 0 (-) >0.05
rs1555668 chr20:2847377 VPS16 C - 10 T vs. C 0.008 (T) 0.092 (T) <1 (-) 0 (-) >0.05
rs112715178 chr20:2817499 PCED1A C - 9 A vs. G 0.025 (G) - >1 (-) 40 (-) >0.05
rs8116097 chr20:2792802 TMEM239 [-2812bp] C - 7 A vs. G 0.017 (A) 0.208 (A) <1 (-) 0 (-) >0.05
rs79127996 chr20:2885482 PTPRA C - 13 A vs. G 0.125 (A) 0.033 (A) <1 (-) 0 (-) >0.05
rs112543840 chr20:2876099 PTPRA C - 13 C vs. G 0.108 (G) 0.05 (G) >1 (-) 0 (-) >0.05
rs215561 chr20:2797015 TMEM239 C - 13 A vs. G 0.408 (G) 0.392 (A) >1 (-) 0 (-) >0.05
rs146720554 chr20:2831182 VPS16 C - 13 A vs. G - - >1 (-) 22 (-) >0.05
rs6138903 chr20:2813650 PCED1A [-2310bp] C - 8 A vs. G 0.008 (A) 0.075 (A) <1 (-) 0 (-) >0.05

Association studies for this region [+]