VPS16, chr20:2821349-2847378 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs7268763 chr20:2828596 VPS16 All: C 108,990 15 G vs. A 0.292 (G) 0.467 (G) 0.93 (0.90-0.96) 0 (0-37) 9.32e-05
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6138902 chr20:2813527 PCED1A [-2433bp] C - 8 A vs. C - 0.075 (A) <1 (-) 0 (-) >0.05
rs140364159 chr20:2783872 CPXM1 [+2589bp] C - 7 A vs. G - - >1 (-) 0 (-) >0.05
rs61325320 chr20:2792425 TMEM239 [-3189bp] C - 8 T vs. C - - <1 (-) 0 (-) >0.05
rs8122994 chr20:2792874 TMEM239 [-2740bp] C - 8 A vs. G 0.017 (G) 0.183 (G) >1 (-) 0 (-) >0.05
rs150407681 chr20:2831976 VPS16 C - 3 T vs. C - - <1 (-) 0 (-) >0.05
rs77470526 chr20:2786670 CPXM1 [+5387bp] C - 13 T vs. C - 0.183 (T) <1 (-) 0 (-) >0.05
rs75480902 chr20:2784420 CPXM1 [+3137bp] C - 13 A vs. C - 0.183 (A) <1 (-) 0 (-) >0.05
rs35646473 chr20:2786987 CPXM1 [+5704bp] C - 13 A vs. C - 0.183 (A) <1 (-) 0 (-) >0.05
rs215536 chr20:2772495 CPXM1 [-2220bp] C - 13 T vs. G 0.475 (G) 0.183 (T) >1 (-) 0 (-) >0.05
rs12625050 chr20:2788626 TMEM239 [-6988bp] C - 13 T vs. C - 0.175 (T) <1 (-) 0 (-) >0.05
rs10211786 chr20:2808664 PCED1A [-7296bp] C - 13 A vs. C 0.117 (A) - <1 (-) 0 (-) >0.05
rs6115681 chr20:2792930 TMEM239 [-2684bp] C - 13 A vs. G 0.283 (A) 0.233 (A) <1 (-) 0 (-) >0.05
rs6051420 chr20:2808662 PCED1A [-7298bp] C - 13 T vs. C 0.117 (T) - <1 (-) 0 (-) >0.05
rs141588433 chr20:2794638 TMEM239 [-976bp] C - 5 T vs. G - - <1 (-) 0 (-) >0.05
rs6051423 chr20:2815231 PCED1A [-729bp] C - 13 A vs. G 0.117 (A) 0.217 (A) <1 (-) 0 (-) >0.05
rs111273656 chr20:2790896 TMEM239 [-4718bp] C - 13 T vs. G - - <1 (-) 0 (-) >0.05
rs6138901 chr20:2809555 PCED1A [-6405bp] C - 7 T vs. C - 0.083 (C) >1 (-) 7 (-) >0.05
rs12106003 chr20:2791484 TMEM239 [-4130bp] C - 8 T vs. C - - <1 (-) 0 (-) >0.05
rs7260992 chr20:2791581 TMEM239 [-4033bp] C - 8 A vs. G - - <1 (-) 0 (-) >0.05
rs12106184 chr20:2791481 TMEM239 [-4133bp] C - 8 T vs. C - - >1 (-) 0 (-) >0.05
rs4813618 chr20:2809123 PCED1A [-6837bp] C - 13 C vs. G 0.117 (C) 0.208 (C) <1 (-) 0 (-) >0.05
rs112419247 chr20:2790827 TMEM239 [-4787bp] C - 11 T vs. C - - >1 (-) 0 (-) >0.05
rs6051413 chr20:2791244 TMEM239 [-4370bp] C - 11 C vs. G - 0.158 (G) >1 (-) 0 (-) >0.05
rs6051421 chr20:2812820 PCED1A [-3140bp] C - 13 A vs. G 0.117 (G) 0.208 (G) >1 (-) 0 (-) >0.05
rs215551 chr20:2785279 CPXM1 [+3996bp] C - 13 T vs. C 0.2 (C) 0.158 (C) >1 (-) 0 (-) >0.05
rs215552 chr20:2785747 CPXM1 [+4464bp] C - 13 T vs. C 0.2 (C) 0.167 (C) >1 (-) 0 (-) >0.05
rs141120138 chr20:2782913 CPXM1 [+1630bp] C - 5 A vs. G - - <1 (-) 17 (-) >0.05
rs6037417 chr20:2793546 TMEM239 [-2068bp] C - 8 A vs. G - - <1 (-) 0 (-) >0.05
rs6051415 chr20:2793605 TMEM239 [-2009bp] C - 8 T vs. C - - >1 (-) 0 (-) >0.05
rs6132973 chr20:2807882 TMEM239 [+6952bp] C - 6 A vs. G - 0.058 (A) <1 (-) 23 (-) >0.05
rs127076 chr20:2778075 CPXM1 C - 12 T vs. C 0.042 (T) 0.0 (T) <1 (-) 0 (-) >0.05
rs6515745 chr20:2794688 TMEM239 [-926bp] C - 8 A vs. G 0.017 (G) 0.225 (G) >1 (-) 0 (-) >0.05
rs215538 chr20:2774629 CPXM1 [-86bp] C - 13 A vs. T 0.175 (A) 0.358 (A) <1 (-) 0 (-) >0.05
rs143179882 chr20:2790768 TMEM239 [-4846bp] C - 4 A vs. G - - >1 (-) 30 (-) >0.05
rs2297047 chr20:2821601 PCED1A C - 13 T vs. C 0.075 (T) 0.208 (T) <1 (-) 0 (-) >0.05
rs127078 chr20:2775332 CPXM1 C - 13 T vs. C 0.175 (C) 0.358 (C) >1 (-) 0 (-) >0.05
rs215539 chr20:2774683 CPXM1 [-32bp] C - 13 A vs. G 0.175 (A) 0.358 (A) <1 (-) 0 (-) >0.05
rs913659 chr20:2821144 PCED1A C - 13 T vs. C 0.117 (T) 0.192 (T) <1 (-) 0 (-) >0.05
rs79119754 chr20:2814096 PCED1A [-1864bp] C - 11 C vs. G 0.025 (G) - >1 (-) 7 (-) >0.05
rs215544 chr20:2780734 CPXM1 C - 13 T vs. C 0.2 (C) 0.167 (C) >1 (-) 0 (-) >0.05
rs3746689 chr20:2817484 PCED1A C - 13 T vs. C 0.108 (T) 0.208 (T) <1 (-) 0 (-) >0.05
rs3746690 chr20:2820797 PCED1A C - 13 A vs. G - 0.208 (A) <1 (-) 0 (-) >0.05
rs8121858 chr20:2834056 VPS16 C - 4 A vs. C - - <1 (-) 36 (-) >0.05
rs6138898 chr20:2788068 CPXM1 [+6785bp] C - 13 T vs. C 0.225 (T) 0.208 (T) <1 (-) 0 (-) >0.05
rs215537 chr20:2774605 CPXM1 [-110bp] C - 12 T vs. C 0.05 (C) - <1 (-) 0 (-) >0.05
rs117455978 chr20:2794358 TMEM239 [-1256bp] C - 3 T vs. C 0.017 (C) - >1 (-) 0 (-) >0.05
rs147724417 chr20:2780401 CPXM1 C - 8 T vs. C - - >1 (-) 0 (-) >0.05
rs2297046 chr20:2821400 PCED1A C - 12 T vs. C 0.075 (T) - <1 (-) 0 (-) >0.05
rs80081239 chr20:2848083 PTPRA C - 13 A vs. G 0.025 (A) - <1 (-) 0 (-) >0.05
rs147271357 chr20:2788630 TMEM239 [-6984bp] C - 5 T vs. C - - <1 (-) 0 (-) >0.05

Association studies for this region [+]