VPS16, chr20:2821349-2847378 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs7268763 chr20:2828596 VPS16 All: C 108,990 15 G vs. A 0.292 (G) 0.467 (G) 0.93 (0.90-0.96) 0 (0-37) 9.32e-05
Meta_image?name=rs7268763

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs62205659 chr20:2829916 VPS16 C - 13 A vs. G 0.067 (G) - <1 (-) 12 (-) >0.05
rs6138905 chr20:2828419 VPS16 C - 13 A vs. G 0.1 (G) 0.25 (G) >1 (-) 0 (-) >0.05
rs58625759 chr20:2799897 TMEM239 C - 13 A vs. C 0.233 (A) 0.275 (A) <1 (-) 0 (-) >0.05
rs4815546 chr20:2801409 TMEM239 [+479bp] C - 13 A vs. G 0.367 (G) 0.367 (G) >1 (-) 0 (-) >0.05
rs622601 chr20:2855466 PTPRA C - 13 A vs. G 0.083 (G) 0.2 (G) <1 (-) 29 (-) >0.05
rs533493 chr20:2863479 PTPRA C - 13 T vs. C 0.075 (C) - <1 (-) 31 (-) >0.05
rs4815547 chr20:2801410 TMEM239 [+480bp] C - 13 T vs. C 0.367 (C) 0.367 (C) >1 (-) 0 (-) >0.05
rs79132121 chr20:2833658 VPS16 C - 13 A vs. G 0.033 (A) - <1 (-) 20 (-) >0.05
rs62207161 chr20:2838175 VPS16 C - 13 T vs. C - - >1 (-) 15 (-) >0.05
rs555502 chr20:2846397 VPS16 C - 13 A vs. G 0.233 (A) 0.433 (A) <1 (-) 0 (-) >0.05
rs2325977 chr20:2838118 VPS16 C - 13 T vs. C 0.083 (T) 0.208 (T) >1 (-) 15 (-) >0.05
rs62205655 chr20:2821726 PCED1A C - 7 A vs. G - - >1 (-) 4 (-) >0.05
rs78894814 chr20:2890223 PTPRA C - 13 T vs. C 0.083 (T) - >1 (-) 28 (-) >0.05
rs6051448 chr20:2838313 VPS16 C - 13 A vs. G - - <1 (-) 16 (-) >0.05
rs117131497 chr20:2818460 PCED1A C - 3 T vs. C 0.017 (C) - <1 (-) 72 (-) >0.05
rs572763 chr20:2893511 PTPRA C - 13 A vs. G 0.083 (A) 0.192 (A) >1 (-) 28 (-) >0.05
rs655076 chr20:2890204 PTPRA C - 13 A vs. G 0.083 (A) - >1 (-) 29 (-) >0.05
rs6051460 chr20:2876691 PTPRA C - 13 C vs. G 0.083 (C) 0.192 (C) >1 (-) 29 (-) >0.05
rs6051459 chr20:2876471 PTPRA C - 13 A vs. G 0.058 (A) 0.192 (A) >1 (-) 29 (-) >0.05
rs62207188 chr20:2876772 PTPRA C - 13 A vs. G - - >1 (-) 29 (-) >0.05
rs1621041 chr20:2876938 PTPRA C - 13 T vs. C - - <1 (-) 29 (-) >0.05
rs556559 chr20:2868743 PTPRA C - 13 A vs. G 0.075 (A) 0.2 (A) >1 (-) 29 (-) >0.05
rs12481210 chr20:2875941 PTPRA C - 13 A vs. G - - <1 (-) 31 (-) >0.05
rs670988 chr20:2858031 PTPRA C - 13 A vs. G - - >1 (-) 30 (-) >0.05
rs60988802 chr20:2827284 VPS16 C - 13 T vs. G 0.083 (T) 0.208 (T) >1 (-) 12 (-) >0.05
rs648919 chr20:2869975 PTPRA C - 13 A vs. G 0.075 (G) - <1 (-) 30 (-) >0.05
rs73084683 chr20:2877385 PTPRA C - 13 T vs. C 0.133 (C) 0.242 (C) >1 (-) 0 (-) >0.05
rs142148313 chr20:2798063 TMEM239 C - 10 C vs. G - - <1 (-) 0 (-) >0.05
rs73584032 chr20:2773686 CPXM1 [-1029bp] C - 13 A vs. G 0.117 (G) 0.175 (G) >1 (-) 30 (-) >0.05
rs508518 chr20:2873366 PTPRA C - 13 T vs. C 0.083 (T) 0.2 (T) >1 (-) 30 (-) >0.05
rs112081527 chr20:2844226 VPS16 C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs117693842 chr20:2859002 PTPRA C - 4 A vs. G - 0.158 (G) <1 (-) 0 (-) >0.05
rs117889536 chr20:2867675 PTPRA C - 4 T vs. C - 0.167 (C) <1 (-) 0 (-) >0.05
chr20:2883134 chr20:2883134 PTPRA C - 3 A vs. T - - <1 (-) 0 (-) >0.05
rs73086613 chr20:2896359 PTPRA C - 13 T vs. C 0.142 (T) 0.242 (T) >1 (-) 0 (-) >0.05
rs3818605 chr20:2840773 VPS16 C - 13 T vs. C 0.142 (T) 0.208 (T) <1 (-) 0 (-) >0.05
rs12151888 chr20:2893954 PTPRA C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs147050647 chr20:2878065 PTPRA C - 11 A vs. G - - <1 (-) 0 (-) >0.05
rs519276 chr20:2885298 PTPRA C - 13 A vs. G 0.083 (A) 0.167 (A) >1 (-) 26 (-) >0.05
rs6051397 chr20:2772654 CPXM1 [-2061bp] C - 13 T vs. C 0.175 (T) 0.367 (T) >1 (-) 29 (-) >0.05
rs2325973 chr20:2835014 VPS16 C - 13 A vs. G 0.083 (G) 0.208 (G) <1 (-) 11 (-) >0.05
rs6084185 chr20:2838212 VPS16 C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs12151900 chr20:2894171 PTPRA C - 13 C vs. G 0.142 (G) 0.242 (G) <1 (-) 0 (-) >0.05

Association studies for this region [+]