Study: Nalls, 2014

Population Ethnicity Diagnosis Source # Cases (% women) # Controls (% women) AAO (sd) AAO range AAE (sd) AAE range Ctrl age (sd) Ctrl age range # Polymorphisms
USA (Ashkenazi) C UKPDSBB CL 268 (33%) 178 (57%) 60 (12) - - - 70 (9) - 9,631

Polymorphisms in this population [-]

Polymorphism Location (hg19) Gene Allele contrast Ethnicity # Studies # Samples 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs140225207 chr19:29595383 intergenic G vs. A All: C 7 19,682 - - 0.57 (0.45-0.72) 42 (0-76) 4.95e-06
rs149593455 chr19:29601942 intergenic C vs. T All: C 7 19,682 - - 0.56 (0.44-0.72) 25 (0-67) 4.06e-06
rs142952037 chr19:29609432 intergenic T vs. C All: C 7 19,682 - - 0.57 (0.44-0.72) 27 (0-69) 5.26e-06
rs148571443 chr19:29629476 intergenic C vs. T All: C 7 19,682 - - 0.56 (0.44-0.71) 22 (0-65) 3.05e-06
rs4802124 chr19:42104609 CEACAM21 [+11412bp] A vs. G All: C 15 108,990 - - 0.93 (0.89-0.96) 32 (0-63) 8.91e-05
rs3848566 chr19:42105482 CEACAM21 [+12285bp] C vs. T All: C 15 108,990 0.233 (C) 0.433 (C) 1.08 (1.04-1.12) 27 (0-61) 2.12e-04
rs1029804 chr19:42107207 CEACAM21 [+14010bp] G vs. T All: C 14 107,386 0.233 (G) 0.425 (G) 1.09 (1.05-1.13) 17 (0-55) 2.39e-05
rs16988130 chr20:2824849 VPS16 G vs. A All: C 15 108,990 0.275 (G) 0.367 (G) 0.93 (0.90-0.97) 0 (0-35) 2.71e-04
rs7268763 chr20:2828596 VPS16 G vs. A All: C 15 108,990 0.292 (G) 0.467 (G) 0.93 (0.90-0.96) 0 (0-37) 9.32e-05
rs6132979 chr20:2833939 VPS16 A vs. G All: C 15 108,990 0.275 (A) 0.342 (A) 0.94 (0.90-0.97) 0 (0-32) 5.15e-04
rs1324392 chr20:2857854 PTPRA G vs. A All: C 15 108,990 0.267 (G) 0.342 (G) 0.94 (0.91-0.98) 0 (0-25) 0.001
rs6138937 chr20:2882931 PTPRA C vs. T All: C 15 108,990 0.275 (C) 0.35 (C) 0.94 (0.91-0.98) 0 (0-18) 0.001
rs6138952 chr20:2901540 PTPRA G vs. A All: C 15 108,990 0.267 (G) 0.342 (G) 0.94 (0.91-0.98) 0 (0-16) 0.001
rs58241213 chr20:3148720 UBOX5 [+7878bp] G vs. A All: C 15 108,990 0.5 (G) 0.342 (G) 1.10 (1.06-1.15) 44 (0-70) 9.89e-07
rs35420316 chr20:3151345 UBOX5 [+10503bp] G vs. A All: C 15 108,990 - - 1.10 (1.06-1.14) 42 (0-69) 5.72e-07
rs55785911 chr20:3153503 UBOX5 [+12661bp] A vs. G All: C 21 120,238 0.417 (A) 0.392 (G) 0.91 (0.88-0.94) 29 (0-58) 3.30e-10
rs55800553 chr20:3154525 UBOX5 [+13683bp] T vs. C All: C 15 108,990 0.425 (T) 0.417 (C) 0.90 (0.86-0.94) 53 (15-74) 3.47e-07
rs4813629 chr20:3155375 UBOX5 [+14533bp] A vs. G All: C 15 108,990 0.45 (A) 0.283 (G) 0.92 (0.89-0.96) 39 (0-67) 6.96e-06
rs67820322 chr20:3161010 DDRGK1 [-9986bp] T vs. C All: C 15 108,990 0.467 (T) 0.283 (C) 0.91 (0.88-0.94) 37 (0-66) 5.33e-08
rs8123287 chr20:3163565 DDRGK1 [-7431bp] C vs. T All: C 15 108,990 - - 0.93 (0.91-0.97) 23 (0-58) 4.01e-05
rs7270155 chr20:3163883 DDRGK1 [-7113bp] C vs. A All: C 15 108,990 - - 0.94 (0.91-0.97) 24 (0-59) 4.39e-05
rs2295545 chr20:3164686 DDRGK1 [-6310bp] C vs. T All: C 15 108,990 0.458 (C) 0.283 (T) 0.91 (0.89-0.94) 39 (0-67) 4.76e-08
rs8119139 chr20:3165887 DDRGK1 [-5109bp] G vs. C All: C 15 108,990 0.442 (G) 0.317 (C) 0.91 (0.87-0.94) 39 (0-67) 2.93e-08
rs8125675 chr20:3165888 DDRGK1 [-5108bp] G vs. A All: C 15 108,990 0.458 (G) 0.317 (A) 0.91 (0.87-0.94) 39 (0-67) 2.95e-08
rs4815573 chr20:3166671 DDRGK1 [-4325bp] C vs. T All: C 15 108,990 - - 1.09 (1.06-1.13) 38 (0-66) 5.53e-08
rs8116557 chr20:3167700 DDRGK1 [-3296bp] A vs. G All: C 15 108,990 - - 1.09 (1.06-1.13) 38 (0-66) 5.43e-08
rs8122372 chr20:3167857 DDRGK1 [-3139bp] G vs. A All: C 15 108,990 - - 1.09 (1.06-1.13) 38 (0-66) 5.88e-08
rs8118008 chr20:3168166 DDRGK1 [-2830bp] A vs. G All: C 15 108,990 - - 1.11 (1.07-1.15) 33 (0-64) 2.32e-08
rs58046886 chr20:3168430 DDRGK1 [-2566bp] A vs. G All: C 15 108,990 - - 1.09 (1.06-1.13) 38 (0-66) 5.99e-08
rs56981937 chr20:3168631 DDRGK1 [-2365bp] A vs. G All: C 15 108,990 - - 1.09 (1.06-1.13) 34 (0-64) 2.31e-07
rs1056881 chr20:3169729 DDRGK1 [-1267bp] A vs. G All: C 15 108,990 0.442 (A) 0.292 (G) 0.91 (0.88-0.94) 33 (0-64) 5.84e-08
rs4815574 chr20:3170172 DDRGK1 [-824bp] C vs. T All: C 15 108,990 0.442 (C) 0.283 (T) 0.92 (0.89-0.95) 32 (0-63) 1.44e-07
rs2295546 chr20:3171628 DDRGK1 A vs. G All: C 15 108,990 0.367 (A) 0.383 (A) 0.93 (0.90-0.97) 39 (0-67) 6.70e-05
rs2295547 chr20:3172246 DDRGK1 C vs. A All: C 15 108,990 0.367 (C) 0.392 (C) 0.93 (0.90-0.97) 39 (0-67) 6.91e-05
rs67249524 chr20:3172584 DDRGK1 G vs. T All: C 15 108,990 0.367 (G) 0.383 (G) 0.93 (0.90-0.97) 39 (0-67) 6.98e-05
rs8119219 chr20:3173907 DDRGK1 C vs. T All: C 15 108,990 0.367 (C) 0.383 (C) 0.93 (0.90-0.97) 39 (0-67) 6.21e-05
rs6515773 chr20:3174105 DDRGK1 C vs. T All: C 15 108,990 - - 1.07 (1.04-1.11) 39 (0-67) 8.11e-05
rs7274047 chr20:3174268 DDRGK1 C vs. T All: C 15 108,990 - - 1.07 (1.04-1.11) 39 (0-67) 6.30e-05
rs2295548 chr20:3175260 DDRGK1 T vs. C All: C 15 108,990 0.367 (T) 0.383 (T) 0.93 (0.90-0.97) 39 (0-67) 6.45e-05
rs2295551 chr20:3175742 DDRGK1 G vs. A All: C 15 108,990 0.367 (G) 0.383 (G) 0.93 (0.90-0.97) 39 (0-67) 6.98e-05
rs77811530 chr20:3213862 SLC4A11 G vs. A All: C 15 108,990 0.075 (G) - 0.94 (0.89-1.00) 0 (0-12) 0.039
rs117725082 chr20:3213909 SLC4A11 A vs. G All: C 15 108,990 0.033 (A) - 0.90 (0.83-0.98) 0 (0-20) 0.011
rs118130809 chr20:3215826 SLC4A11 C vs. T All: C 15 108,990 0.075 (C) - 0.94 (0.89-0.99) 0 (0-12) 0.028
rs78722238 chr20:3218029 SLC4A11 C vs. T All: C 15 108,990 0.075 (C) - 0.94 (0.89-0.99) 0 (0-14) 0.029
rs7264098 chr20:3289751 C20orf194 A vs. G All: C 14 106,227 0.075 (A) - 0.95 (0.89-1.01) 0 (0-29) 0.070
rs2280094 chr20:3653709 ADAM33 A vs. C All: C 15 108,990 0.2 (A) 0.042 (A) 1.07 (1.03-1.11) 0 (-) 7.64e-04
rs12214434 chr20:22836875 intergenic T vs. C All: C 15 108,990 - - 1.17 (1.07-1.27) 0 (0-35) 3.90e-04
rs76209012 chr20:25275266 PYGB C vs. T All: C 14 103,470 0.025 (C) - 1.28 (1.13-1.45) 12 (0-50) 1.38e-04
rs116944367 chr20:25515309 NINL A vs. G All: C 14 103,470 0.042 (A) - 1.27 (1.13-1.42) 28 (0-62) 7.82e-05
rs141718558 chr20:25539937 NINL C vs. T All: C 14 103,470 - - 0.79 (0.71-0.89) 33 (0-65) 6.59e-05