Study: Nalls, 2014

Population Ethnicity Diagnosis Source # Cases (% women) # Controls (% women) AAO (sd) AAO range AAE (sd) AAE range Ctrl age (sd) Ctrl age range # Polymorphisms
USA (Ashkenazi) C UKPDSBB CL 268 (33%) 178 (57%) 60 (12) - - - 70 (9) - 9,631

Polymorphisms in this population [-]

Polymorphism Location (hg19) Gene Allele contrast Ethnicity # Studies # Samples 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6662833 chr1:171654720 VAMP4 [-14580bp] A vs. C All: C 14 103,470 0.133 (A) 0.125 (A) 0.92 (0.88-0.96) 12 (0-50) 6.33e-05
rs73042000 chr1:171655212 VAMP4 [-14088bp] G vs. T All: C 14 103,470 0.133 (G) 0.133 (G) 0.92 (0.88-0.96) 12 (0-51) 5.16e-05
rs73042001 chr1:171655251 VAMP4 [-14049bp] A vs. G All: C 14 103,470 0.133 (A) 0.133 (A) 0.92 (0.88-0.96) 13 (0-51) 6.57e-05
rs111418653 chr1:171655761 VAMP4 [-13539bp] G vs. T All: C 14 103,470 0.05 (G) - 0.91 (0.86-0.95) 7 (0-58) 3.95e-05
rs113929058 chr1:171655768 VAMP4 [-13532bp] T vs. C All: C 14 103,470 - - 1.11 (1.05-1.16) 7 (0-58) 3.67e-05
rs112377079 chr1:171655812 VAMP4 [-13488bp] C vs. T All: C 14 103,470 - - 1.10 (1.05-1.15) 6 (0-58) 7.70e-05
rs113749082 chr1:171655845 VAMP4 [-13455bp] A vs. G All: C 14 103,470 - - 1.09 (1.04-1.15) 8 (0-46) 4.00e-04
rs9662506 chr1:171655984 VAMP4 [-13316bp] A vs. G All: C 14 103,470 0.133 (A) 0.133 (A) 0.92 (0.88-0.96) 9 (0-47) 6.27e-05
rs9659845 chr1:171656007 VAMP4 [-13293bp] G vs. T All: C 14 103,470 0.125 (G) 0.133 (G) 0.92 (0.88-0.96) 10 (0-48) 6.43e-05
rs7511999 chr1:171656768 VAMP4 [-12532bp] G vs. A All: C 14 103,470 0.142 (G) 0.125 (G) 0.92 (0.88-0.96) 9 (0-47) 7.05e-05
rs10913497 chr1:171657015 VAMP4 [-12285bp] T vs. C All: C 14 103,470 - - 1.10 (1.05-1.15) 9 (0-47) 9.42e-05
rs142821193 chr1:171663510 VAMP4 [-5790bp] T vs. C All: C 15 108,990 - - 1.10 (1.05-1.14) 41 (0-68) 1.53e-05
rs113462425 chr1:171663674 VAMP4 [-5626bp] A vs. G All: C 15 108,990 - - 1.10 (1.05-1.15) 6 (0-57) 1.95e-05
rs62046907 chr1:171664325 VAMP4 [-4975bp] T vs. C All: C 15 108,990 0.083 (T) 0.108 (T) 1.01 (0.97-1.06) 0 (0-39) 0.696
rs12123727 chr1:171665508 VAMP4 [-3792bp] A vs. G All: C 15 108,990 - - 1.09 (1.05-1.14) 6 (0-56) 4.85e-05
rs10913507 chr1:171666647 VAMP4 [-2653bp] C vs. A All: C 15 108,990 0.158 (C) 0.133 (C) 0.93 (0.89-0.96) 1 (0-54) 7.35e-05
rs11580415 chr1:171666832 VAMP4 [-2468bp] G vs. A All: C 15 108,990 0.133 (G) 0.133 (G) 0.91 (0.88-0.95) 3 (0-55) 1.07e-05
rs11579698 chr1:171666922 VAMP4 [-2378bp] T vs. C All: C 15 108,990 0.133 (T) 0.133 (T) 0.91 (0.88-0.95) 0 (0-53) 1.94e-05
rs11578179 chr1:171667160 VAMP4 [-2140bp] G vs. A All: C 15 108,990 - - 1.10 (1.05-1.14) 3 (0-55) 1.10e-05
rs6679354 chr1:171668002 VAMP4 [-1298bp] C vs. T All: C 15 108,990 0.133 (C) - 0.91 (0.87-0.95) 1 (0-54) 8.71e-06
rs10913508 chr1:171668479 VAMP4 [-821bp] C vs. T All: C 15 108,990 0.25 (C) 0.35 (C) 0.94 (0.90-0.97) 41 (0-68) 1.21e-04
rs12127026 chr1:171668813 VAMP4 [-487bp] G vs. A All: C 15 108,990 0.1 (G) 0.167 (G) 0.91 (0.88-0.95) 2 (0-55) 1.04e-05
rs10913511 chr1:171668951 VAMP4 [-349bp] A vs. G All: C 15 108,990 0.133 (A) 0.158 (A) 0.91 (0.88-0.95) 2 (0-55) 9.65e-06
rs1052676 chr1:171673054 VAMP4 C vs. T All: C 15 108,990 0.133 (C) 0.133 (C) 0.91 (0.88-0.95) 4 (0-55) 8.73e-06
rs10903 chr1:171673236 VAMP4 A vs. G All: C 15 108,990 0.133 (A) 0.158 (A) 0.91 (0.88-0.95) 3 (0-55) 8.58e-06
rs15655 chr1:171673272 VAMP4 A vs. C All: C 15 108,990 0.133 (A) 0.133 (A) 0.91 (0.88-0.95) 3 (0-55) 8.49e-06
rs11801846 chr1:171674241 VAMP4 T vs. G All: C 15 108,990 0.133 (T) 0.167 (T) 0.91 (0.87-0.95) 5 (0-56) 9.67e-06
rs11803174 chr1:171674338 VAMP4 T vs. C All: C 15 108,990 0.133 (T) 0.167 (T) 0.91 (0.87-0.95) 5 (0-56) 9.40e-06
rs12128536 chr1:171674607 VAMP4 C vs. T All: C 15 108,990 0.133 (C) 0.158 (C) 0.91 (0.88-0.95) 3 (0-55) 7.67e-06
rs6685742 chr1:171674774 VAMP4 A vs. G All: C 14 107,386 0.242 (A) 0.358 (A) 0.93 (0.90-0.97) 44 (0-70) 7.66e-05
rs11583530 chr1:171677177 VAMP4 C vs. T All: C 15 108,990 0.25 (C) - 0.93 (0.90-0.97) 38 (0-67) 8.42e-05
rs10913529 chr1:171679465 VAMP4 C vs. A All: C 15 108,990 0.133 (C) 0.167 (C) 0.91 (0.88-0.95) 2 (0-55) 7.16e-06
rs10913530 chr1:171679958 VAMP4 A vs. G All: C 15 108,990 0.25 (A) 0.367 (A) 0.93 (0.90-0.97) 40 (0-67) 7.99e-05
rs10798603 chr1:171680382 VAMP4 T vs. C All: C 15 108,990 0.25 (T) 0.358 (T) 0.93 (0.90-0.97) 39 (0-67) 8.63e-05
rs999685 chr1:171683194 VAMP4 T vs. C All: C 15 108,990 0.25 (T) 0.367 (T) 0.93 (0.90-0.97) 39 (0-67) 8.26e-05
rs11583920 chr1:171683611 VAMP4 G vs. A All: C 15 108,990 0.133 (G) 0.142 (G) 0.91 (0.88-0.95) 1 (0-54) 7.00e-06
rs763225 chr1:171684359 VAMP4 T vs. G All: C 15 108,990 0.25 (T) 0.367 (T) 0.93 (0.90-0.97) 39 (0-67) 7.19e-05
rs1001373 chr1:171684506 VAMP4 A vs. G All: C 15 108,990 0.133 (A) 0.167 (A) 0.91 (0.88-0.95) 1 (0-54) 6.91e-06
rs4468194 chr1:171684769 VAMP4 T vs. C All: C 15 108,990 0.25 (T) 0.367 (T) 0.93 (0.90-0.97) 39 (0-67) 8.27e-05
rs4342884 chr1:171684832 VAMP4 A vs. G All: C 15 108,990 0.25 (A) 0.367 (A) 0.93 (0.90-0.97) 38 (0-67) 7.80e-05
rs78213404 chr1:171685491 VAMP4 T vs. C All: C 15 108,990 0.133 (T) 0.15 (T) 0.91 (0.88-0.95) 1 (0-54) 6.45e-06
rs6673782 chr1:171685571 VAMP4 C vs. T All: C 15 108,990 0.25 (C) 0.367 (C) 0.93 (0.90-0.96) 39 (0-67) 3.55e-05
rs2227229 chr1:171686486 VAMP4 T vs. C All: C 15 108,990 0.25 (T) 0.367 (T) 0.93 (0.90-0.97) 38 (0-67) 7.33e-05
rs6700606 chr1:171687336 VAMP4 T vs. C All: C 15 108,990 0.25 (T) 0.358 (T) 0.93 (0.90-0.97) 39 (0-67) 6.78e-05
rs2073484 chr1:171687597 VAMP4 C vs. T All: C 15 108,990 0.25 (C) 0.375 (C) 0.93 (0.90-0.97) 39 (0-67) 6.67e-05
rs11808099 chr1:171688790 VAMP4 C vs. A All: C 15 108,990 0.142 (C) 0.167 (C) 0.91 (0.88-0.95) 1 (0-54) 5.80e-06
rs11806314 chr1:171689486 VAMP4 T vs. G All: C 15 108,990 0.25 (T) 0.375 (T) 0.93 (0.90-0.96) 39 (0-67) 5.09e-05
rs6668623 chr1:171691714 VAMP4 C vs. T All: C 15 108,990 - - 1.07 (1.03-1.11) 37 (0-66) 9.82e-05
rs6678890 chr1:171694566 VAMP4 A vs. C All: C 15 108,990 0.133 (A) 0.142 (A) 0.91 (0.88-0.95) 0 (0-53) 5.38e-06
rs12139610 chr1:171696112 VAMP4 C vs. T All: C 15 108,990 0.25 (C) - 0.93 (0.90-0.97) 36 (0-66) 8.81e-05