Study: Nalls, 2014

Population Ethnicity Diagnosis Source # Cases (% women) # Controls (% women) AAO (sd) AAO range AAE (sd) AAE range Ctrl age (sd) Ctrl age range # Polymorphisms
USA (PROGENI-GenePD) C UKPDSBB CL 828 (40%) 852 (60%) 62 (11) - - - 55 (13) - 9,762

Polymorphisms in this population [-]

Polymorphism Location (hg19) Gene Allele contrast Ethnicity # Studies # Samples 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs4953926 chr2:135472847 TMEM163 C vs. T All: C 15 108,990 0.158 (C) 0.292 (C) 0.91 (0.87-0.94) 41 (0-68) 4.39e-06
rs6749329 chr2:135474365 TMEM163 C vs. T All: C 15 108,990 0.15 (C) 0.267 (C) 0.91 (0.87-0.95) 33 (0-64) 4.71e-05
rs13018063 chr2:135475808 TMEM163 A vs. G All: C 15 108,990 0.15 (A) 0.267 (A) 0.91 (0.87-0.95) 34 (0-64) 4.95e-05
rs62171394 chr2:135476795 TMEM163 [+225bp] A vs. G All: C 15 108,990 0.125 (A) - 0.91 (0.87-0.95) 26 (0-60) 2.53e-05
rs62171396 chr2:135476859 TMEM163 [+289bp] T vs. C All: C 15 108,990 0.15 (T) 0.267 (T) 0.91 (0.87-0.95) 31 (0-63) 4.88e-05
rs7565713 chr2:135477639 TMEM163 [+1069bp] A vs. G All: C 15 108,990 0.167 (A) 0.258 (A) 0.91 (0.87-0.95) 41 (0-68) 5.02e-06
rs35220888 chr2:135479582 TMEM163 [+3012bp] A vs. G All: C 15 108,990 0.15 (A) 0.017 (A) 0.91 (0.87-0.95) 30 (0-62) 3.48e-05
rs6723108 chr2:135479980 TMEM163 [+3410bp] T vs. G All: C 15 108,990 0.483 (T) - 0.90 (0.87-0.93) 27 (0-61) 7.63e-11
rs17321713 chr2:135480363 TMEM163 [+3793bp] T vs. C All: C 15 108,990 0.167 (T) 0.017 (T) 0.91 (0.87-0.95) 30 (0-62) 3.54e-05
rs60597813 chr2:135480924 TMEM163 [+4354bp] C vs. T All: C 15 108,990 0.167 (C) 0.3 (C) 0.91 (0.87-0.95) 42 (0-69) 4.96e-06
rs6756200 chr2:135481278 TMEM163 [+4708bp] C vs. T All: C 15 108,990 - - 0.89 (0.86-0.92) 11 (0-48) 3.48e-11
rs4953928 chr2:135481843 TMEM163 [+5273bp] G vs. A All: C 15 108,990 0.167 (G) 0.292 (G) 0.91 (0.87-0.95) 43 (0-69) 4.08e-06
rs7592128 chr2:135482870 TMEM163 [+6300bp] T vs. C All: C 15 108,990 0.167 (T) 0.275 (T) 0.91 (0.87-0.95) 34 (0-64) 3.72e-05
rs3739034 chr2:135483381 TMEM163 [+6811bp] C vs. T All: C 15 108,990 0.158 (C) 0.283 (C) 0.91 (0.87-0.95) 33 (0-64) 3.33e-05
rs948583 chr2:135483413 TMEM163 [+6843bp] A vs. G All: C 15 108,990 0.167 (A) 0.308 (A) 0.90 (0.87-0.94) 41 (0-68) 3.19e-06
rs3886740 chr2:135483960 TMEM163 [+7390bp] T vs. G All: C 15 108,990 0.167 (T) 0.308 (T) 0.91 (0.87-0.94) 42 (0-69) 3.40e-06
rs3886741 chr2:135484101 TMEM163 [+7531bp] A vs. G All: C 15 108,990 0.15 (A) 0.283 (A) 0.91 (0.87-0.95) 34 (0-64) 3.61e-05
rs2212722 chr2:135484247 TMEM163 [+7677bp] A vs. C All: C 15 108,990 0.167 (A) 0.3 (A) 0.90 (0.87-0.94) 39 (0-67) 4.91e-06
rs13399881 chr2:135484676 TMEM163 [+8106bp] G vs. A All: C 15 108,990 0.167 (G) 0.308 (G) 0.91 (0.87-0.95) 44 (0-69) 5.15e-06
rs10171770 chr2:135485316 TMEM163 [+8746bp] T vs. C All: C 15 108,990 0.167 (T) 0.283 (T) 0.90 (0.87-0.94) 42 (0-69) 3.04e-06
rs34947476 chr2:135486150 TMEM163 [+9580bp] G vs. T All: C 15 108,990 0.158 (G) 0.308 (G) 0.91 (0.87-0.95) 34 (0-64) 2.90e-05
rs34405766 chr2:135486189 TMEM163 [+9619bp] A vs. G All: C 15 108,990 0.158 (A) 0.283 (A) 0.91 (0.87-0.95) 34 (0-64) 2.93e-05
rs34252323 chr2:135486302 TMEM163 [+9732bp] A vs. G All: C 15 108,990 0.158 (A) 0.283 (A) 0.91 (0.87-0.95) 33 (0-64) 2.87e-05
rs17883869 chr2:135489179 TMEM163 [+12609bp] G vs. A All: C 15 108,990 0.133 (G) 0.292 (G) 0.90 (0.87-0.94) 43 (0-69) 3.39e-06
rs72617009 chr2:135489628 TMEM163 [+13058bp] A vs. G All: C 15 108,990 0.117 (A) 0.458 (G) 0.90 (0.85-0.95) 0 (0-3) 8.58e-05
rs4430991 chr2:135491932 TMEM163 [+15362bp] T vs. C All: C 15 108,990 0.125 (T) 0.017 (T) 0.91 (0.87-0.95) 28 (0-61) 1.47e-05
rs1942055 chr2:135498924 TMEM163 [+22354bp] C vs. G All: C 15 108,990 0.483 (C) - 0.89 (0.86-0.92) 28 (0-61) 1.96e-11
rs6727396 chr2:135499236 TMEM163 [+22666bp] C vs. A All: C 15 108,990 0.1 (C) 0.292 (C) 0.90 (0.86-0.94) 41 (0-68) 8.12e-07
rs1942041 chr2:135515492 TMEM163 [+38922bp] C vs. T All: C 15 108,990 0.367 (C) 0.017 (T) 0.88 (0.85-0.91) 0 (0-45) 6.07e-14
rs78877892 chr2:135516504 TMEM163 [+39934bp] G vs. A All: C 15 108,990 0.142 (G) - 0.90 (0.86-0.95) 27 (0-61) 9.78e-06
rs67451942 chr2:135517106 TMEM163 [+40536bp] G vs. A All: C 15 108,990 0.142 (G) - 0.91 (0.87-0.95) 40 (0-68) 1.05e-05
rs13033373 chr2:135520534 TMEM163 [+43964bp] C vs. T All: C 15 108,990 0.142 (C) - 0.90 (0.86-0.95) 27 (0-61) 1.02e-05
rs4954172 chr2:135522851 TMEM163 [+46281bp] C vs. T All: C 15 108,990 - - 1.11 (1.06-1.16) 28 (0-61) 7.35e-06
rs77422475 chr2:135528787 intergenic A vs. G All: C 15 108,990 0.125 (A) 0.008 (A) 0.90 (0.86-0.95) 26 (0-60) 1.74e-05
rs4954174 chr2:135531703 intergenic G vs. A All: C 15 108,990 0.142 (G) 0.292 (G) 0.90 (0.86-0.94) 42 (0-69) 3.23e-06
rs17652245 chr2:135533621 intergenic C vs. T All: C 15 108,990 0.117 (C) 0.017 (C) 0.90 (0.86-0.95) 31 (0-63) 1.27e-05
rs16831001 chr2:135534794 intergenic C vs. A All: C 15 108,990 0.325 (C) 0.475 (C) 0.89 (0.86-0.92) 27 (0-61) 2.01e-10
rs6734820 chr2:135536808 intergenic G vs. A All: C 15 108,990 0.308 (G) 0.475 (G) 0.89 (0.86-0.92) 21 (0-57) 7.64e-11
rs6741007 chr2:135537119 intergenic G vs. T All: C 15 108,990 0.383 (G) 0.025 (T) 0.87 (0.84-0.90) 0 (0-38) 6.33e-15
rs6751833 chr2:135537898 intergenic T vs. G All: C 15 108,990 0.408 (T) 0.292 (G) 0.87 (0.84-0.90) 0 (0-41) 6.99e-15
rs6430538 chr2:135539967 intergenic T vs. C All: C 21 120,238 0.408 (T) 0.025 (C) 0.88 (0.85-0.90) 0 (0-45) 3.35e-19
rs55687393 chr2:135540231 intergenic G vs. C All: C 15 108,990 0.325 (G) 0.467 (G) 0.89 (0.86-0.92) 22 (0-58) 1.11e-10
rs17698151 chr2:135543367 intergenic C vs. T All: C 13 104,623 0.125 (C) - 0.89 (0.85-0.93) 4 (0-58) 2.11e-06
rs4954176 chr2:135543649 intergenic T vs. C All: C 15 108,990 0.317 (T) 0.467 (T) 0.89 (0.86-0.92) 21 (0-57) 1.66e-10
rs11884708 chr2:135545282 intergenic C vs. A All: C 15 108,990 0.317 (C) 0.467 (C) 0.89 (0.86-0.93) 22 (0-58) 1.72e-10
rs2156000 chr2:135546430 ACMSD [-49687bp] T vs. C All: C 15 108,990 0.325 (T) 0.467 (T) 0.89 (0.86-0.93) 20 (0-56) 1.91e-10
rs1016120 chr2:135547289 ACMSD [-48828bp] A vs. G All: C 15 108,990 0.333 (A) 0.467 (A) 0.89 (0.86-0.92) 21 (0-57) 1.12e-10
rs62171424 chr2:135549113 ACMSD [-47004bp] C vs. T All: C 15 108,990 - - 1.10 (1.05-1.16) 21 (0-57) 3.03e-05
rs4954179 chr2:135557737 ACMSD [-38380bp] G vs. A All: C 15 108,990 0.325 (G) 0.467 (G) 0.89 (0.86-0.93) 22 (0-58) 2.39e-10
rs6716734 chr2:135561141 ACMSD [-34976bp] C vs. T All: C 15 108,990 0.317 (C) 0.467 (C) 0.89 (0.86-0.93) 26 (0-60) 2.40e-10