Study: Nalls, 2014

Population Ethnicity Diagnosis Source # Cases (% women) # Controls (% women) AAO (sd) AAO range AAE (sd) AAE range Ctrl age (sd) Ctrl age range # Polymorphisms
USA (CHARGE-CHS) C self-report, ICD-9, medications PO 107 (45%) 3164 (61%) 73 (5) - - - 72 (5) - 9,655

Polymorphisms in this population [-]

Polymorphism Location (hg19) Gene Allele contrast Ethnicity # Studies # Samples 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs76984555 chr18:46367492 CTIF A vs. G All: C 14 105,041 0.033 (A) 0.417 (A) 0.86 (0.79-0.93) 0 (0-46) 8.73e-05
rs16950052 chr18:46382353 CTIF C vs. T All: C 14 105,041 0.058 (C) 0.425 (C) 0.87 (0.81-0.93) 0 (0-51) 7.45e-05
rs141070920 chr18:46389511 CTIF G vs. A All: C 14 105,041 - - 1.20 (1.10-1.31) 14 (0-53) 4.60e-05
rs75368394 chr18:50301737 DCC C vs. A All: C 15 108,990 0.108 (C) - 1.13 (1.07-1.20) 4 (0-56) 2.57e-05
rs113902371 chr18:50301765 DCC C vs. T All: C 15 108,990 0.108 (C) - 1.13 (1.07-1.20) 4 (0-56) 2.59e-05
rs9954223 chr18:50301788 DCC G vs. A All: C 15 108,990 0.108 (G) - 1.11 (1.06-1.17) 0 (0-51) 6.68e-05
rs9954366 chr18:50301832 DCC T vs. C All: C 15 108,990 0.108 (T) 0.033 (T) 1.11 (1.06-1.17) 0 (0-50) 7.27e-05
rs9954387 chr18:50301888 DCC T vs. C All: C 15 108,990 0.108 (T) - 1.11 (1.06-1.17) 0 (0-51) 7.27e-05
rs9956954 chr18:50302147 DCC T vs. C All: C 15 108,990 0.108 (T) - 1.11 (1.06-1.17) 0 (0-49) 6.88e-05
rs9946240 chr18:50302221 DCC C vs. T All: C 15 108,990 0.108 (C) 0.033 (C) 1.11 (1.05-1.17) 0 (0-51) 7.47e-05
rs9957066 chr18:50302280 DCC T vs. C All: C 15 108,990 0.108 (T) 0.033 (T) 1.11 (1.05-1.17) 0 (0-51) 7.42e-05
rs28720976 chr18:50302448 DCC T vs. C All: C 15 108,990 0.108 (T) 0.033 (T) 1.11 (1.05-1.17) 0 (0-51) 7.76e-05
rs28710315 chr18:50302476 DCC T vs. C All: C 15 108,990 0.108 (T) 0.033 (T) 1.11 (1.05-1.17) 0 (0-50) 8.23e-05
rs9947544 chr18:50334201 DCC A vs. G All: C 15 108,990 0.108 (A) - 1.11 (1.05-1.17) 13 (0-51) 1.00e-04
rs112373415 chr18:50335927 DCC T vs. C All: C 15 108,990 0.108 (T) 0.033 (T) 1.11 (1.05-1.17) 14 (0-52) 9.62e-05
rs4330004 chr18:50337632 DCC A vs. G All: C 15 108,990 0.108 (A) - 1.11 (1.05-1.17) 13 (0-51) 9.15e-05
rs1431735 chr18:50337688 DCC A vs. G All: C 15 108,990 0.108 (A) 0.017 (A) 1.11 (1.05-1.17) 14 (0-52) 8.80e-05
rs9964103 chr18:50339432 DCC T vs. G All: C 15 108,990 0.108 (T) 0.033 (T) 1.11 (1.05-1.17) 13 (0-51) 1.14e-04
rs11082949 chr18:50340987 DCC G vs. A All: C 15 108,990 0.1 (G) 0.167 (G) 1.11 (1.05-1.16) 12 (0-50) 1.35e-04
rs112315835 chr18:50344725 DCC T vs. C All: C 15 108,990 0.108 (T) 0.167 (T) 1.11 (1.05-1.17) 12 (0-50) 1.26e-04
rs16955568 chr18:50345028 DCC A vs. C All: C 15 108,990 0.108 (A) 0.167 (A) 1.11 (1.05-1.17) 11 (0-49) 9.72e-05
rs9304433 chr18:50345783 DCC T vs. G All: C 15 108,990 0.108 (T) 0.167 (T) 1.12 (1.06-1.19) 22 (0-58) 7.94e-05
rs62091919 chr18:67950442 SOCS6 [-5695bp] G vs. T All: C 15 108,990 0.167 (G) 0.117 (G) 1.09 (1.04-1.14) 0 (0-38) 7.23e-05
rs7242186 chr18:67981861 SOCS6 G vs. A All: C 15 108,990 0.225 (G) 0.092 (G) 1.07 (1.04-1.11) 0 (0-28) 1.31e-04
rs7244655 chr18:67986087 SOCS6 G vs. A All: C 15 108,990 - - 0.93 (0.89-0.96) 0 (0-43) 4.76e-05
rs72967810 chr18:72031638 C18orf63 [+5216bp] C vs. A All: C 15 108,990 0.192 (C) 0.025 (C) 1.11 (1.06-1.17) 2 (0-55) 7.83e-05
rs75277584 chr18:72031845 C18orf63 [+5423bp] C vs. T All: C 15 108,990 - - 0.90 (0.85-0.95) 0 (0-53) 5.90e-05
rs139883368 chr18:72031982 C18orf63 [+5560bp] A vs. C All: C 15 108,990 - - 0.90 (0.85-0.95) 0 (0-53) 5.93e-05
rs72967819 chr18:72033573 C18orf63 [+7151bp] A vs. G All: C 15 108,990 0.167 (A) 0.05 (A) 1.11 (1.05-1.16) 0 (0-53) 5.52e-05
rs2096948 chr18:72041185 C18orf63 [+14763bp] C vs. T All: C 15 108,990 0.117 (C) 0.033 (C) 1.10 (1.05-1.16) 9 (0-46) 1.42e-04
rs12458543 chr18:72042407 C18orf63 [+15985bp] C vs. T All: C 15 108,990 0.1 (C) 0.033 (C) 1.12 (1.06-1.19) 0 (0-53) 8.95e-05
rs4534977 chr19:1952090 CSNK1G2 G vs. A All: C 14 103,235 0.442 (G) 0.342 (A) 1.03 (0.99-1.06) 0 (0-54) 0.109
rs11084921 chr19:1952280 CSNK1G2 T vs. C All: C 14 103,235 0.442 (T) 0.342 (C) 1.03 (0.99-1.06) 0 (0-55) 0.111
rs4807189 chr19:1976640 CSNK1G2 C vs. A All: C 14 103,235 0.45 (C) 0.292 (A) 1.04 (1.00-1.08) 0 (0-48) 0.057
rs10404636 chr19:1983860 BTBD2 [-1587bp] T vs. C All: C 14 103,235 - - 0.95 (0.91-0.99) 0 (0-36) 0.008
rs4807191 chr19:1990309 BTBD2 C vs. T All: C 14 103,235 0.45 (C) 0.217 (T) 1.04 (1.01-1.08) 0 (0-41) 0.023
rs2159026 chr19:2318969 LSM7 [-2547bp] G vs. A All: C 14 103,235 0.2 (G) 0.442 (G) 1.09 (1.04-1.14) 44 (0-70) 9.35e-05
rs4807228 chr19:2319273 LSM7 [-2243bp] T vs. C All: C 14 103,235 0.258 (T) 0.317 (C) 1.07 (1.03-1.11) 47 (2-72) 2.09e-04
rs73520518 chr19:2320831 LSM7 [-685bp] C vs. T All: C 13 99,286 - 0.108 (T) 0.81 (0.74-0.89) 40 (0-69) 1.40e-05
rs10406430 chr19:2321308 LSM7 [-208bp] A vs. G All: C 13 99,286 0.042 (A) 0.475 (A) 1.17 (1.09-1.25) 40 (0-69) 2.96e-06
rs7251424 chr19:2321430 LSM7 [-86bp] C vs. T All: C 14 103,235 0.258 (C) 0.3 (T) 1.08 (1.04-1.12) 51 (9-73) 3.60e-05
rs886882 chr19:2322085 LSM7 G vs. A All: C 14 103,235 0.242 (G) 0.3 (A) 1.08 (1.04-1.12) 51 (10-74) 2.16e-05
rs876692 chr19:2322165 LSM7 A vs. G All: C 13 99,286 0.05 (A) 0.467 (A) 1.21 (1.12-1.30) 34 (0-66) 1.33e-06
rs56291613 chr19:2323197 LSM7 A vs. G All: C 14 103,235 0.4 (A) 0.308 (G) 1.08 (1.04-1.12) 20 (0-57) 1.35e-05
rs10404826 chr19:2324384 LSM7 A vs. G All: C 14 103,235 0.25 (A) 0.45 (A) 1.10 (1.05-1.14) 49 (5-72) 1.08e-05
rs10402629 chr19:2324458 LSM7 G vs. A All: C 20 114,483 0.242 (G) 0.45 (G) 1.07 (1.03-1.11) 47 (10-68) 1.20e-04
rs8100786 chr19:2324847 LSM7 A vs. G All: C 14 103,235 0.25 (A) 0.45 (A) 1.09 (1.05-1.14) 46 (0-71) 1.61e-05
rs12983575 chr19:2325172 LSM7 A vs. C All: C 14 103,235 0.242 (A) 0.45 (A) 1.09 (1.05-1.14) 48 (4-72) 1.32e-05
rs12977961 chr19:2326897 LSM7 C vs. T All: C 14 103,235 0.425 (C) 0.283 (T) 1.08 (1.05-1.12) 18 (0-56) 5.61e-06
rs12976273 chr19:2326902 LSM7 G vs. A All: C 14 103,235 0.425 (G) 0.275 (A) 1.08 (1.05-1.12) 18 (0-56) 5.62e-06