Study: Nalls, 2014

Population Ethnicity Diagnosis Source # Cases (% women) # Controls (% women) AAO (sd) AAO range AAE (sd) AAE range Ctrl age (sd) Ctrl age range # Polymorphisms
USA (CHARGE-FHS) C UKPDSBB PO 60 (42%) 3889 (55%) 76 (11) - - - 64 (12) - 9,223

Polymorphisms in this population [-]

Polymorphism Location (hg19) Gene Allele contrast Ethnicity # Studies # Samples 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6672082 chr1:171701129 VAMP4 A vs. G All: C 15 108,990 0.25 (A) 0.358 (A) 0.93 (0.90-0.97) 38 (0-66) 8.36e-05
rs10913559 chr1:171701487 VAMP4 T vs. C All: C 15 108,990 0.242 (T) 0.35 (T) 0.93 (0.90-0.96) 35 (0-65) 2.54e-05
rs6688447 chr1:171702864 VAMP4 T vs. C All: C 15 108,990 0.25 (T) 0.358 (T) 0.93 (0.90-0.97) 38 (0-66) 8.40e-05
rs10913565 chr1:171706706 VAMP4 G vs. A All: C 15 108,990 0.133 (G) 0.142 (G) 0.91 (0.88-0.95) 0 (0-50) 5.35e-06
rs2298914 chr1:171710405 VAMP4 T vs. C All: C 15 108,990 0.133 (T) 0.175 (T) 0.91 (0.88-0.95) 0 (0-51) 6.48e-06
rs12119232 chr1:171711152 VAMP4 C vs. A All: C 15 108,990 0.142 (C) 0.167 (C) 0.91 (0.88-0.95) 0 (0-52) 6.53e-06
rs10913578 chr1:171713468 VAMP4 [+2081bp] C vs. A All: C 15 108,990 0.167 (C) 0.2 (C) 0.93 (0.90-0.96) 0 (0-50) 7.22e-05
rs16843230 chr1:171713824 VAMP4 [+2437bp] C vs. A All: C 15 108,990 0.158 (C) 0.192 (C) 0.93 (0.90-0.96) 0 (0-51) 7.28e-05
rs17649068 chr1:171713893 VAMP4 [+2506bp] T vs. C All: C 15 108,990 0.133 (T) 0.2 (T) 0.91 (0.88-0.95) 0 (0-51) 9.30e-06
rs112293138 chr1:171714002 VAMP4 [+2615bp] G vs. T All: C 15 108,990 0.133 (G) 0.2 (G) 0.91 (0.88-0.95) 0 (0-51) 9.07e-06
rs112754220 chr1:171714111 VAMP4 [+2724bp] C vs. T All: C 15 108,990 0.167 (C) 0.2 (C) 0.92 (0.89-0.96) 0 (0-47) 5.49e-05
rs74530574 chr1:171714200 VAMP4 [+2813bp] A vs. G All: C 15 108,990 0.125 (A) 0.183 (A) 0.91 (0.88-0.95) 0 (0-51) 1.28e-05
rs10913582 chr1:171715585 VAMP4 [+4198bp] A vs. G All: C 15 108,990 0.133 (A) 0.2 (A) 0.91 (0.88-0.95) 0 (0-50) 9.51e-06
rs11590680 chr1:171716574 VAMP4 [+5187bp] A vs. G All: C 15 108,990 0.133 (A) 0.2 (A) 0.91 (0.88-0.95) 0 (0-49) 9.95e-06
rs11577073 chr1:171716724 VAMP4 [+5337bp] T vs. C All: C 15 108,990 0.133 (T) 0.192 (T) 0.91 (0.88-0.95) 0 (0-49) 1.04e-05
rs10913587 chr1:171717417 VAMP4 [+6030bp] C vs. T All: C 15 108,990 - - 1.10 (1.05-1.14) 0 (0-47) 1.24e-05
rs10489251 chr1:171717534 VAMP4 [+6147bp] C vs. A All: C 15 108,990 0.133 (C) 0.192 (C) 0.91 (0.88-0.95) 0 (0-49) 1.01e-05
rs10753181 chr1:171718031 VAMP4 [+6644bp] A vs. G All: C 15 108,990 0.167 (A) 0.2 (A) 0.93 (0.90-0.96) 0 (0-52) 7.72e-05
rs11578699 chr1:171719769 VAMP4 [+8382bp] T vs. C All: C 15 108,990 0.133 (T) - 0.91 (0.88-0.95) 0 (0-49) 1.04e-05
rs11577197 chr1:171719798 VAMP4 [+8411bp] T vs. G All: C 15 108,990 0.117 (T) 0.208 (T) 0.91 (0.88-0.95) 0 (0-49) 1.04e-05
rs11578723 chr1:171719954 VAMP4 [+8567bp] C vs. T All: C 15 108,990 - - 1.10 (1.05-1.14) 0 (0-49) 1.04e-05
rs11580522 chr1:171720978 VAMP4 [+9591bp] C vs. T All: C 15 108,990 0.133 (C) 0.2 (C) 0.91 (0.88-0.95) 0 (0-48) 1.01e-05
rs10913609 chr1:171722152 VAMP4 [+10765bp] A vs. G All: C 15 108,990 - - 1.10 (1.05-1.14) 0 (0-49) 1.00e-05
rs78075821 chr1:171724645 VAMP4 [+13258bp] A vs. C All: C 15 108,990 0.133 (A) 0.175 (A) 0.91 (0.88-0.95) 0 (0-50) 1.20e-05
rs16843251 chr1:171725830 VAMP4 [+14443bp] C vs. T All: C 15 108,990 0.167 (C) 0.15 (C) 0.93 (0.90-0.96) 0 (0-50) 8.83e-05
rs2421911 chr1:171728983 VAMP4 [+17596bp] G vs. A All: C 15 108,990 - - 1.09 (1.05-1.14) 0 (0-52) 1.48e-05
rs10913622 chr1:171729675 VAMP4 [+18288bp] C vs. T All: C 15 108,990 0.167 (C) 0.383 (C) 0.93 (0.89-0.96) 0 (0-51) 6.00e-05
rs9268035 chr1:174616960 RABGAP1L A vs. G All: C 14 103,235 - - 1.06 (1.03-1.10) 6 (0-58) 3.75e-04
rs116592662 chr1:194832351 intergenic T vs. G All: C 14 103,470 0.025 (T) - 0.74 (0.65-0.86) 0 (0-34) 3.40e-05
rs141609073 chr1:195024297 intergenic T vs. C All: C 14 103,470 - - 1.28 (1.11-1.48) 0 (0-34) 7.97e-04
rs4951255 chr1:205645063 SLC45A3 A vs. C All: C 15 108,990 0.308 (A) 0.442 (A) 0.92 (0.89-0.96) 28 (0-61) 1.31e-05
rs868844 chr1:205646646 SLC45A3 G vs. A All: C 15 108,990 0.308 (G) 0.442 (G) 0.92 (0.89-0.96) 28 (0-61) 1.25e-05
rs61824662 chr1:205649447 SLC45A3 G vs. A All: C 15 108,990 - 0.192 (A) 1.23 (1.11-1.35) 0 (0-50) 5.02e-05
rs61824663 chr1:205651850 SLC45A3 [+2263bp] G vs. A All: C 15 108,990 - - 1.25 (1.13-1.37) 11 (0-49) 5.32e-06
rs4245718 chr1:205652472 SLC45A3 [+2885bp] A vs. G All: C 15 108,990 0.308 (A) 0.442 (A) 0.92 (0.89-0.96) 31 (0-63) 9.23e-06
rs12402185 chr1:205655549 SLC45A3 [+5962bp] G vs. T All: C 15 108,990 - 0.192 (T) 1.25 (1.14-1.37) 11 (0-49) 3.97e-06
rs4601639 chr1:205656583 SLC45A3 [+6996bp] C vs. T All: C 15 108,990 0.308 (C) 0.45 (C) 0.92 (0.89-0.95) 31 (0-63) 7.18e-06
rs823105 chr1:205657570 SLC45A3 [+7983bp] G vs. A All: C 15 108,990 0.425 (G) - 0.96 (0.93-0.99) 0 (0-49) 0.006
rs12037559 chr1:205661964 SLC45A3 [+12377bp] T vs. C All: C 15 108,990 0.283 (T) 0.433 (T) 0.93 (0.89-0.96) 29 (0-62) 4.60e-05
rs1172198 chr1:205662718 SLC45A3 [+13131bp] G vs. A All: C 15 108,990 0.425 (G) - 0.96 (0.93-0.99) 5 (0-56) 0.018
rs12118655 chr1:205663478 SLC45A3 [+13891bp] G vs. A All: C 15 108,990 0.033 (G) 0.358 (G) 1.14 (1.09-1.20) 9 (0-47) 4.38e-08
rs823101 chr1:205667006 NUCKS1 [-14941bp] T vs. C All: C 15 108,990 0.433 (T) - 0.96 (0.93-0.99) 8 (0-44) 0.017
rs823098 chr1:205670726 NUCKS1 [-11221bp] A vs. G All: C 15 108,990 0.017 (A) 0.2 (A) 0.79 (0.72-0.87) 7 (0-43) 7.57e-07
rs11240554 chr1:205671644 NUCKS1 [-10303bp] T vs. C All: C 15 108,990 0.283 (T) 0.425 (T) 0.91 (0.88-0.95) 6 (0-57) 6.40e-07
rs1772140 chr1:205672482 NUCKS1 [-9465bp] A vs. G All: C 15 108,990 0.0 (A) 0.2 (A) 0.79 (0.72-0.87) 4 (0-56) 6.83e-07
rs72750964 chr1:205675240 NUCKS1 [-6707bp] C vs. T All: C 15 108,990 0.425 (C) - 0.95 (0.92-0.98) 14 (0-52) 0.001
rs112215351 chr1:205675429 NUCKS1 [-6518bp] T vs. C All: C 15 108,990 - - 1.10 (1.05-1.14) 0 (0-45) 1.94e-05
rs11580015 chr1:205676088 NUCKS1 [-5859bp] G vs. C All: C 15 108,990 0.45 (G) - 0.95 (0.92-0.98) 15 (0-52) 0.001
rs12748961 chr1:205676263 NUCKS1 [-5684bp] C vs. T All: C 15 108,990 0.033 (C) 0.375 (C) 1.15 (1.09-1.20) 14 (0-52) 3.50e-08
rs3747973 chr1:205677148 NUCKS1 [-4799bp] A vs. G All: C 15 108,990 0.383 (A) 0.35 (G) 0.89 (0.86-0.92) 38 (0-66) 1.69e-12