Study: Nalls, 2014

Population Ethnicity Diagnosis Source # Cases (% women) # Controls (% women) AAO (sd) AAO range AAE (sd) AAE range Ctrl age (sd) Ctrl age range # Polymorphisms
USA (CHARGE-FHS) C UKPDSBB PO 60 (42%) 3889 (55%) 76 (11) - - - 64 (12) - 9,223

Polymorphisms in this population [-]

Polymorphism Location (hg19) Gene Allele contrast Ethnicity # Studies # Samples 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs823135 chr1:205738166 RAB7L1 T vs. C All: C 15 108,990 0.008 (T) 0.167 (T) 0.80 (0.73-0.88) 0 (0-52) 9.39e-06
rs823136 chr1:205738251 RAB7L1 A vs. C All: C 15 108,990 - 0.167 (C) 1.26 (1.14-1.38) 3 (0-55) 1.76e-06
rs823138 chr1:205739192 RAB7L1 T vs. C All: C 15 108,990 0.0 (T) 0.167 (T) 0.80 (0.73-0.88) 2 (0-55) 2.11e-06
rs708723 chr1:205739266 RAB7L1 C vs. T All: C 15 108,990 0.442 (C) 0.392 (T) 0.89 (0.86-0.92) 56 (22-75) 1.38e-13
rs823139 chr1:205739396 RAB7L1 T vs. G All: C 15 108,990 0.125 (T) 0.158 (T) 0.90 (0.85-0.94) 36 (0-66) 1.38e-05
rs823140 chr1:205740403 RAB7L1 G vs. A All: C 15 108,990 - - 1.19 (1.10-1.29) 29 (0-62) 9.78e-06
rs823144 chr1:205744546 RAB7L1 C vs. A All: C 15 108,990 0.2 (C) 0.383 (A) 0.91 (0.87-0.94) 43 (0-69) 1.10e-07
rs1775151 chr1:205745684 RAB7L1 [+1096bp] C vs. T All: C 15 108,990 0.2 (C) 0.383 (T) 0.91 (0.87-0.94) 43 (0-69) 1.03e-07
rs1772153 chr1:205745782 RAB7L1 [+1194bp] T vs. C All: C 15 108,990 0.183 (T) 0.383 (C) 0.91 (0.87-0.94) 21 (0-57) 2.83e-07
rs1772154 chr1:205745932 RAB7L1 [+1344bp] T vs. C All: C 15 108,990 - - 1.10 (1.06-1.15) 21 (0-57) 2.67e-07
rs10900524 chr1:205748309 RAB7L1 [+3721bp] G vs. A All: C 15 108,990 0.183 (G) 0.383 (A) 0.91 (0.87-0.94) 20 (0-56) 2.47e-07
rs11394622 chr1:205749786 RAB7L1 [+5198bp] G vs. A All: C 15 108,990 - 0.15 (A) 1.31 (1.17-1.47) 2 (0-55) 2.44e-06
rs863725 chr1:205751196 RAB7L1 [+6608bp] C vs. T All: C 15 108,990 0.192 (C) - 0.90 (0.87-0.94) 40 (0-68) 6.45e-08
rs947211 chr1:205752665 SLC41A1 [-5556bp] A vs. G All: C 14 106,227 0.2 (A) 0.383 (G) 0.91 (0.87-0.94) 44 (0-70) 2.18e-07
rs1772156 chr1:205752894 SLC41A1 [-5327bp] T vs. C All: C 15 108,990 0.183 (T) 0.383 (C) 0.91 (0.87-0.94) 18 (0-55) 2.17e-07
rs885224 chr1:205753097 SLC41A1 [-5124bp] A vs. G All: C 15 108,990 0.208 (A) 0.383 (G) 0.90 (0.87-0.94) 41 (0-68) 7.64e-08
rs1775158 chr1:205753675 SLC41A1 [-4546bp] A vs. G All: C 15 108,990 - - 1.11 (1.07-1.15) 37 (0-66) 8.87e-08
rs1772157 chr1:205753808 SLC41A1 [-4413bp] C vs. T All: C 15 108,990 - - 1.10 (1.06-1.15) 17 (0-54) 2.27e-06
rs1775159 chr1:205753812 SLC41A1 [-4409bp] G vs. A All: C 15 108,990 - - 1.11 (1.06-1.15) 43 (0-69) 4.95e-07
rs1772158 chr1:205753820 SLC41A1 [-4401bp] C vs. T All: C 15 108,990 - - 1.11 (1.06-1.15) 42 (0-68) 5.43e-07
rs12565968 chr1:205755046 SLC41A1 [-3175bp] G vs. A All: C 15 108,990 0.192 (G) 0.383 (A) 0.91 (0.88-0.95) 34 (0-64) 2.53e-06
rs12565321 chr1:205755144 SLC41A1 [-3077bp] C vs. T All: C 15 108,990 - - 1.09 (1.05-1.13) 41 (0-68) 9.57e-06
rs12567894 chr1:205755151 SLC41A1 [-3070bp] T vs. C All: C 15 108,990 - - 1.09 (1.05-1.13) 42 (0-68) 1.22e-05
rs11240567 chr1:205755265 SLC41A1 [-2956bp] C vs. T All: C 15 108,990 - 0.35 (C) 1.10 (1.05-1.14) 31 (0-63) 2.41e-06
rs1775144 chr1:205756012 SLC41A1 [-2209bp] G vs. A All: C 15 108,990 0.0 (G) 0.158 (G) 0.79 (0.72-0.87) 4 (0-55) 9.61e-07
rs1775145 chr1:205756143 SLC41A1 [-2078bp] C vs. A All: C 15 108,990 0.208 (C) 0.392 (A) 0.91 (0.88-0.95) 51 (12-73) 8.66e-07
rs1775146 chr1:205756168 SLC41A1 [-2053bp] A vs. G All: C 15 108,990 0.2 (A) 0.392 (G) 0.92 (0.88-0.95) 33 (0-64) 3.57e-06
rs12740609 chr1:205756535 SLC41A1 [-1686bp] G vs. A All: C 15 108,990 - 0.167 (A) 1.29 (1.17-1.42) 24 (0-59) 3.95e-07
rs7536285 chr1:205757569 SLC41A1 [-652bp] T vs. C All: C 15 108,990 - - 1.09 (1.05-1.14) 35 (0-65) 2.89e-06
rs7513115 chr1:205757692 SLC41A1 [-529bp] A vs. G All: C 15 108,990 - - 1.09 (1.05-1.14) 34 (0-65) 2.77e-06
rs1775148 chr1:205757824 SLC41A1 [-397bp] T vs. C All: C 15 108,990 - - 1.10 (1.06-1.14) 0 (0-53) 7.16e-08
rs1341249 chr1:205759876 SLC41A1 T vs. C All: C 15 108,990 0.167 (T) 0.392 (C) 0.91 (0.87-0.95) 3 (0-55) 1.01e-05
rs708726 chr1:205762139 SLC41A1 T vs. G All: C 15 108,990 0.192 (T) 0.4 (G) 0.91 (0.88-0.95) 21 (0-57) 1.34e-06
rs823155 chr1:205762946 SLC41A1 T vs. C All: C 15 108,990 0.192 (T) 0.392 (C) 0.91 (0.88-0.95) 22 (0-58) 1.34e-06
rs823156 chr1:205764640 SLC41A1 G vs. A All: C 15 108,990 0.142 (G) 0.258 (G) 0.91 (0.87-0.95) 29 (0-62) 8.37e-06
rs823065 chr1:205771061 SLC41A1 T vs. G All: C 15 108,990 0.05 (T) 0.258 (T) 0.86 (0.80-0.92) 0 (0-38) 1.03e-05
rs823066 chr1:205771173 SLC41A1 A vs. G All: C 15 108,990 0.05 (A) 0.258 (A) 0.86 (0.80-0.92) 0 (0-39) 1.16e-05
rs823067 chr1:205771704 SLC41A1 C vs. T All: C 15 108,990 - - 1.16 (1.08-1.24) 0 (0-44) 2.81e-05
rs823068 chr1:205771720 SLC41A1 C vs. T All: C 15 108,990 - - 1.16 (1.09-1.25) 0 (0-36) 1.81e-05
rs823069 chr1:205771801 SLC41A1 A vs. G All: C 15 108,990 - - 1.10 (1.06-1.15) 44 (0-70) 4.53e-06
rs823070 chr1:205772370 SLC41A1 T vs. C All: C 15 108,990 0.05 (T) 0.258 (T) 0.86 (0.80-0.92) 0 (0-40) 1.24e-05
rs823071 chr1:205773379 SLC41A1 G vs. T All: C 15 108,990 0.05 (G) 0.258 (G) 0.86 (0.80-0.92) 0 (0-35) 9.96e-06
rs708729 chr1:205773461 SLC41A1 C vs. T All: C 15 108,990 0.15 (C) 0.258 (C) 0.91 (0.87-0.94) 47 (3-71) 3.00e-06
rs823072 chr1:205773652 SLC41A1 C vs. T All: C 15 108,990 0.167 (C) 0.258 (C) 0.91 (0.88-0.95) 46 (1-70) 7.44e-06
rs823073 chr1:205774156 SLC41A1 T vs. C All: C 15 108,990 0.042 (T) 0.258 (T) 0.85 (0.79-0.92) 0 (0-43) 1.31e-05
rs823076 chr1:205775810 SLC41A1 T vs. C All: C 15 108,990 0.05 (T) 0.267 (T) 0.85 (0.79-0.92) 0 (0-21) 6.98e-05
rs823077 chr1:205776109 SLC41A1 T vs. C All: C 15 108,990 0.05 (T) 0.258 (T) 0.86 (0.80-0.92) 0 (0-40) 1.42e-05
rs823078 chr1:205776458 SLC41A1 T vs. C All: C 15 108,990 0.058 (T) 0.258 (T) 0.86 (0.80-0.92) 0 (0-40) 1.42e-05
rs823079 chr1:205777159 SLC41A1 C vs. T All: C 15 108,990 - - 1.17 (1.09-1.25) 0 (0-40) 1.42e-05
rs708730 chr1:205777780 SLC41A1 G vs. A All: C 15 108,990 0.117 (G) 0.258 (G) 0.91 (0.87-0.95) 55 (20-75) 9.00e-06