Study: Nalls, 2014

Population Ethnicity Diagnosis Source # Cases (% women) # Controls (% women) AAO (sd) AAO range AAE (sd) AAE range Ctrl age (sd) Ctrl age range # Polymorphisms
Iceland (CHARGE-AGES-RS) C ICD codes, medication PO 146 (55%) 5609 (59%) 75 (8) - - - 69 (9) - 8,205

Polymorphisms in this population [-]

Polymorphism Location (hg19) Gene Allele contrast Ethnicity # Studies # Samples 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2227229 chr1:171686486 VAMP4 T vs. C All: C 15 108,990 0.25 (T) 0.367 (T) 0.93 (0.90-0.97) 38 (0-67) 7.33e-05
rs6700606 chr1:171687336 VAMP4 T vs. C All: C 15 108,990 0.25 (T) 0.358 (T) 0.93 (0.90-0.97) 39 (0-67) 6.78e-05
rs2073484 chr1:171687597 VAMP4 C vs. T All: C 15 108,990 0.25 (C) 0.375 (C) 0.93 (0.90-0.97) 39 (0-67) 6.67e-05
rs11808099 chr1:171688790 VAMP4 C vs. A All: C 15 108,990 0.142 (C) 0.167 (C) 0.91 (0.88-0.95) 1 (0-54) 5.80e-06
rs11806314 chr1:171689486 VAMP4 T vs. G All: C 15 108,990 0.25 (T) 0.375 (T) 0.93 (0.90-0.96) 39 (0-67) 5.09e-05
rs6668623 chr1:171691714 VAMP4 C vs. T All: C 15 108,990 - - 1.07 (1.03-1.11) 37 (0-66) 9.82e-05
rs6678890 chr1:171694566 VAMP4 A vs. C All: C 15 108,990 0.133 (A) 0.142 (A) 0.91 (0.88-0.95) 0 (0-53) 5.38e-06
rs12139610 chr1:171696112 VAMP4 C vs. T All: C 15 108,990 0.25 (C) - 0.93 (0.90-0.97) 36 (0-66) 8.81e-05
rs55670848 chr1:171697497 VAMP4 T vs. C All: C 15 108,990 0.133 (T) 0.167 (T) 0.91 (0.88-0.95) 0 (0-52) 5.71e-06
rs12045452 chr1:171698647 VAMP4 G vs. A All: C 15 108,990 0.25 (G) 0.358 (G) 0.93 (0.90-0.97) 38 (0-67) 7.39e-05
rs6682452 chr1:171698822 VAMP4 C vs. T All: C 15 108,990 0.25 (C) 0.333 (C) 0.93 (0.90-0.97) 38 (0-67) 8.13e-05
rs6674468 chr1:171698837 VAMP4 T vs. C All: C 15 108,990 0.25 (T) - 0.93 (0.90-0.97) 38 (0-67) 8.18e-05
rs6674688 chr1:171699030 VAMP4 T vs. C All: C 15 108,990 0.25 (T) 0.367 (T) 0.93 (0.90-0.97) 38 (0-67) 7.63e-05
rs6674774 chr1:171699078 VAMP4 A vs. C All: C 15 108,990 0.242 (A) 0.367 (A) 0.93 (0.90-0.97) 36 (0-66) 9.05e-05
rs6672082 chr1:171701129 VAMP4 A vs. G All: C 15 108,990 0.25 (A) 0.358 (A) 0.93 (0.90-0.97) 38 (0-66) 8.36e-05
rs10913559 chr1:171701487 VAMP4 T vs. C All: C 15 108,990 0.242 (T) 0.35 (T) 0.93 (0.90-0.96) 35 (0-65) 2.54e-05
rs6688447 chr1:171702864 VAMP4 T vs. C All: C 15 108,990 0.25 (T) 0.358 (T) 0.93 (0.90-0.97) 38 (0-66) 8.40e-05
rs10913565 chr1:171706706 VAMP4 G vs. A All: C 15 108,990 0.133 (G) 0.142 (G) 0.91 (0.88-0.95) 0 (0-50) 5.35e-06
rs2298914 chr1:171710405 VAMP4 T vs. C All: C 15 108,990 0.133 (T) 0.175 (T) 0.91 (0.88-0.95) 0 (0-51) 6.48e-06
rs12119232 chr1:171711152 VAMP4 C vs. A All: C 15 108,990 0.142 (C) 0.167 (C) 0.91 (0.88-0.95) 0 (0-52) 6.53e-06
rs10913578 chr1:171713468 VAMP4 [+2081bp] C vs. A All: C 15 108,990 0.167 (C) 0.2 (C) 0.93 (0.90-0.96) 0 (0-50) 7.22e-05
rs16843230 chr1:171713824 VAMP4 [+2437bp] C vs. A All: C 15 108,990 0.158 (C) 0.192 (C) 0.93 (0.90-0.96) 0 (0-51) 7.28e-05
rs17649068 chr1:171713893 VAMP4 [+2506bp] T vs. C All: C 15 108,990 0.133 (T) 0.2 (T) 0.91 (0.88-0.95) 0 (0-51) 9.30e-06
rs112293138 chr1:171714002 VAMP4 [+2615bp] G vs. T All: C 15 108,990 0.133 (G) 0.2 (G) 0.91 (0.88-0.95) 0 (0-51) 9.07e-06
rs112754220 chr1:171714111 VAMP4 [+2724bp] C vs. T All: C 15 108,990 0.167 (C) 0.2 (C) 0.92 (0.89-0.96) 0 (0-47) 5.49e-05
rs74530574 chr1:171714200 VAMP4 [+2813bp] A vs. G All: C 15 108,990 0.125 (A) 0.183 (A) 0.91 (0.88-0.95) 0 (0-51) 1.28e-05
rs10913582 chr1:171715585 VAMP4 [+4198bp] A vs. G All: C 15 108,990 0.133 (A) 0.2 (A) 0.91 (0.88-0.95) 0 (0-50) 9.51e-06
rs11590680 chr1:171716574 VAMP4 [+5187bp] A vs. G All: C 15 108,990 0.133 (A) 0.2 (A) 0.91 (0.88-0.95) 0 (0-49) 9.95e-06
rs11577073 chr1:171716724 VAMP4 [+5337bp] T vs. C All: C 15 108,990 0.133 (T) 0.192 (T) 0.91 (0.88-0.95) 0 (0-49) 1.04e-05
rs10913587 chr1:171717417 VAMP4 [+6030bp] C vs. T All: C 15 108,990 - - 1.10 (1.05-1.14) 0 (0-47) 1.24e-05
rs10489251 chr1:171717534 VAMP4 [+6147bp] C vs. A All: C 15 108,990 0.133 (C) 0.192 (C) 0.91 (0.88-0.95) 0 (0-49) 1.01e-05
rs10753181 chr1:171718031 VAMP4 [+6644bp] A vs. G All: C 15 108,990 0.167 (A) 0.2 (A) 0.93 (0.90-0.96) 0 (0-52) 7.72e-05
rs11578699 chr1:171719769 VAMP4 [+8382bp] T vs. C All: C 15 108,990 0.133 (T) - 0.91 (0.88-0.95) 0 (0-49) 1.04e-05
rs11577197 chr1:171719798 VAMP4 [+8411bp] T vs. G All: C 15 108,990 0.117 (T) 0.208 (T) 0.91 (0.88-0.95) 0 (0-49) 1.04e-05
rs11578723 chr1:171719954 VAMP4 [+8567bp] C vs. T All: C 15 108,990 - - 1.10 (1.05-1.14) 0 (0-49) 1.04e-05
rs11580522 chr1:171720978 VAMP4 [+9591bp] C vs. T All: C 15 108,990 0.133 (C) 0.2 (C) 0.91 (0.88-0.95) 0 (0-48) 1.01e-05
rs10913609 chr1:171722152 VAMP4 [+10765bp] A vs. G All: C 15 108,990 - - 1.10 (1.05-1.14) 0 (0-49) 1.00e-05
rs78075821 chr1:171724645 VAMP4 [+13258bp] A vs. C All: C 15 108,990 0.133 (A) 0.175 (A) 0.91 (0.88-0.95) 0 (0-50) 1.20e-05
rs16843251 chr1:171725830 VAMP4 [+14443bp] C vs. T All: C 15 108,990 0.167 (C) 0.15 (C) 0.93 (0.90-0.96) 0 (0-50) 8.83e-05
rs2421911 chr1:171728983 VAMP4 [+17596bp] G vs. A All: C 15 108,990 - - 1.09 (1.05-1.14) 0 (0-52) 1.48e-05
rs10913622 chr1:171729675 VAMP4 [+18288bp] C vs. T All: C 15 108,990 0.167 (C) 0.383 (C) 0.93 (0.89-0.96) 0 (0-51) 6.00e-05
rs116592662 chr1:194832351 intergenic T vs. G All: C 14 103,470 0.025 (T) - 0.74 (0.65-0.86) 0 (0-34) 3.40e-05
rs141609073 chr1:195024297 intergenic T vs. C All: C 14 103,470 - - 1.28 (1.11-1.48) 0 (0-34) 7.97e-04
rs1275162 chr1:198888369 intergenic C vs. T All: C 6 21,129 0.008 (C) 0.0 (C) 0.51 (0.34-0.76) 0 (0-51) 8.50e-04
rs322910 chr1:199078252 intergenic G vs. A All: C 7 22,733 0.025 (G) 0.0 (G) 0.51 (0.37-0.71) 0 (0-68) 5.53e-05
rs4951255 chr1:205645063 SLC45A3 A vs. C All: C 15 108,990 0.308 (A) 0.442 (A) 0.92 (0.89-0.96) 28 (0-61) 1.31e-05
rs868844 chr1:205646646 SLC45A3 G vs. A All: C 15 108,990 0.308 (G) 0.442 (G) 0.92 (0.89-0.96) 28 (0-61) 1.25e-05
rs61824662 chr1:205649447 SLC45A3 G vs. A All: C 15 108,990 - 0.192 (A) 1.23 (1.11-1.35) 0 (0-50) 5.02e-05
rs61824663 chr1:205651850 SLC45A3 [+2263bp] G vs. A All: C 15 108,990 - - 1.25 (1.13-1.37) 11 (0-49) 5.32e-06
rs4245718 chr1:205652472 SLC45A3 [+2885bp] A vs. G All: C 15 108,990 0.308 (A) 0.442 (A) 0.92 (0.89-0.96) 31 (0-63) 9.23e-06