Study: Nalls, 2014

Population Ethnicity Diagnosis Source # Cases (% women) # Controls (% women) AAO (sd) AAO range AAE (sd) AAE range Ctrl age (sd) Ctrl age range # Polymorphisms
Iceland (IPDGC-deCODE) C UKPDSBB CL 604 (48%) 4916 (57%) 62 (12) - - - 80 (8) - 9,406

Polymorphisms in this population [-]

Polymorphism Location (hg19) Gene Allele contrast Ethnicity # Studies # Samples 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs10928507 chr2:135396631 TMEM163 A vs. G All: C 15 108,990 0.392 (A) 0.15 (G) 0.92 (0.89-0.95) 0 (0-31) 1.89e-07
rs10803548 chr2:135396738 TMEM163 C vs. A All: C 15 108,990 0.317 (C) 0.217 (A) 0.92 (0.89-0.96) 0 (0-43) 2.52e-06
rs6705916 chr2:135397569 TMEM163 C vs. T All: C 15 108,990 0.392 (C) 0.15 (T) 0.92 (0.89-0.95) 0 (0-34) 1.48e-07
rs6729090 chr2:135401878 TMEM163 G vs. A All: C 15 108,990 0.317 (G) 0.233 (A) 0.93 (0.90-0.96) 0 (0-43) 3.92e-06
rs10193171 chr2:135403199 TMEM163 A vs. G All: C 15 108,990 0.392 (A) 0.15 (G) 0.92 (0.89-0.95) 0 (0-31) 1.27e-07
rs1568121 chr2:135406606 TMEM163 G vs. A All: C 15 108,990 0.392 (G) 0.15 (A) 0.92 (0.89-0.95) 0 (0-32) 1.34e-07
rs1568120 chr2:135406890 TMEM163 A vs. G All: C 15 108,990 0.392 (A) 0.158 (G) 0.92 (0.89-0.95) 0 (0-32) 1.30e-07
rs6724774 chr2:135407285 TMEM163 C vs. T All: C 15 108,990 0.4 (C) 0.15 (T) 0.92 (0.89-0.95) 0 (0-33) 2.76e-07
rs6724777 chr2:135407292 TMEM163 C vs. T All: C 15 108,990 0.392 (C) 0.142 (T) 0.92 (0.89-0.95) 0 (0-33) 2.75e-07
rs6724866 chr2:135407310 TMEM163 C vs. A All: C 15 108,990 0.4 (C) 0.15 (A) 0.92 (0.89-0.95) 0 (0-32) 3.46e-07
rs6752634 chr2:135407355 TMEM163 G vs. A All: C 15 108,990 0.408 (G) 0.15 (A) 0.92 (0.89-0.95) 0 (0-32) 3.54e-07
rs6742638 chr2:135407360 TMEM163 T vs. G All: C 15 108,990 0.392 (T) 0.133 (G) 0.92 (0.89-0.95) 0 (0-30) 6.30e-07
rs6739706 chr2:135407409 TMEM163 A vs. C All: C 15 108,990 0.4 (A) 0.15 (C) 0.92 (0.89-0.95) 0 (0-33) 1.33e-07
rs12691869 chr2:135407641 TMEM163 T vs. C All: C 15 108,990 0.392 (T) 0.15 (C) 0.92 (0.89-0.95) 0 (0-27) 3.30e-07
rs10210052 chr2:135417350 TMEM163 C vs. T All: C 15 108,990 0.392 (C) 0.125 (T) 0.92 (0.89-0.95) 0 (0-28) 9.86e-08
rs7560738 chr2:135419163 TMEM163 A vs. G All: C 15 108,990 0.108 (A) 0.233 (A) 0.92 (0.87-0.97) 0 (0-42) 9.04e-04
rs7564273 chr2:135419794 TMEM163 C vs. T All: C 15 108,990 - - 1.10 (1.05-1.15) 0 (0-0) 7.10e-05
rs11688414 chr2:135420237 TMEM163 G vs. A All: C 15 108,990 0.408 (G) - 0.90 (0.88-0.93) 0 (0-29) 1.15e-09
rs4954158 chr2:135426618 TMEM163 T vs. C All: C 15 108,990 0.333 (T) 0.233 (C) 0.92 (0.89-0.95) 0 (0-43) 1.07e-06
rs4954159 chr2:135426782 TMEM163 A vs. G All: C 15 108,990 0.317 (A) 0.233 (G) 0.92 (0.89-0.95) 0 (0-42) 1.22e-06
rs7571113 chr2:135427392 TMEM163 A vs. G All: C 15 108,990 0.317 (A) 0.233 (G) 0.92 (0.89-0.95) 0 (0-43) 1.04e-06
rs11898084 chr2:135428054 TMEM163 T vs. C All: C 15 108,990 0.317 (T) 0.233 (C) 0.92 (0.89-0.95) 0 (0-42) 1.03e-06
rs7575742 chr2:135429002 TMEM163 A vs. G All: C 15 108,990 0.325 (A) 0.225 (G) 0.92 (0.89-0.95) 0 (0-43) 1.02e-06
rs998451 chr2:135429288 TMEM163 G vs. A All: C 15 108,990 0.442 (G) - 0.90 (0.87-0.93) 28 (0-61) 1.53e-10
rs1467194 chr2:135430621 TMEM163 A vs. G All: C 15 108,990 0.317 (A) 0.233 (G) 0.92 (0.89-0.95) 0 (0-42) 9.87e-07
rs6745983 chr2:135430709 TMEM163 G vs. A All: C 15 108,990 0.392 (G) 0.15 (A) 0.91 (0.89-0.95) 0 (0-28) 7.31e-08
rs11898465 chr2:135431449 TMEM163 G vs. T All: C 15 108,990 0.392 (G) 0.15 (T) 0.91 (0.89-0.94) 0 (0-30) 6.24e-08
rs4954160 chr2:135431692 TMEM163 A vs. C All: C 15 108,990 0.392 (A) 0.158 (C) 0.91 (0.89-0.94) 0 (0-30) 6.11e-08
rs4954161 chr2:135431983 TMEM163 A vs. G All: C 15 108,990 - - 0.91 (0.89-0.94) 0 (0-30) 6.06e-08
rs35570087 chr2:135432180 TMEM163 G vs. A All: C 15 108,990 - - 0.91 (0.89-0.94) 0 (0-31) 5.87e-08
rs6430529 chr2:135433023 TMEM163 G vs. T All: C 15 108,990 0.317 (G) 0.217 (T) 0.92 (0.89-0.95) 0 (0-44) 4.78e-07
rs6713239 chr2:135434849 TMEM163 C vs. T All: C 15 108,990 0.317 (C) 0.217 (T) 0.92 (0.89-0.95) 0 (0-45) 4.09e-07
rs1104802 chr2:135436366 TMEM163 A vs. C All: C 15 108,990 0.317 (A) 0.233 (C) 0.92 (0.89-0.95) 0 (0-45) 3.79e-07
rs1104801 chr2:135436601 TMEM163 G vs. A All: C 15 108,990 0.333 (G) 0.217 (A) 0.92 (0.89-0.95) 0 (0-46) 3.98e-07
rs872668 chr2:135437503 TMEM163 A vs. G All: C 15 108,990 0.15 (A) 0.025 (A) 0.90 (0.86-0.94) 28 (0-61) 9.20e-07
rs883917 chr2:135437534 TMEM163 T vs. C All: C 14 102,085 0.15 (T) 0.033 (T) 0.90 (0.86-0.94) 36 (0-66) 4.84e-06
rs13391832 chr2:135438404 TMEM163 A vs. G All: C 15 108,990 0.15 (A) 0.033 (A) 0.90 (0.86-0.94) 31 (0-63) 6.17e-07
rs16830908 chr2:135438471 TMEM163 A vs. G All: C 15 108,990 0.15 (A) 0.033 (A) 0.91 (0.87-0.95) 23 (0-58) 1.18e-05
rs4954162 chr2:135438789 TMEM163 A vs. G All: C 15 108,990 0.142 (A) 0.008 (A) 0.90 (0.86-0.94) 22 (0-58) 6.90e-06
rs62171377 chr2:135439752 TMEM163 A vs. G All: C 15 108,990 0.15 (A) - 0.90 (0.87-0.95) 22 (0-58) 1.14e-05
rs6430531 chr2:135440167 TMEM163 C vs. T All: C 15 108,990 0.15 (C) - 0.90 (0.86-0.94) 32 (0-64) 8.21e-07
rs10928510 chr2:135443940 TMEM163 G vs. A All: C 15 108,990 0.142 (G) 0.258 (G) 0.90 (0.86-0.94) 37 (0-66) 1.69e-06
rs62171378 chr2:135443955 TMEM163 G vs. A All: C 15 108,990 0.142 (G) - 0.91 (0.86-0.95) 24 (0-59) 1.98e-05
rs4953923 chr2:135445946 TMEM163 T vs. C All: C 15 108,990 0.142 (T) 0.258 (T) 0.91 (0.87-0.95) 32 (0-63) 4.22e-05
rs10171677 chr2:135446390 TMEM163 A vs. G All: C 15 108,990 0.475 (A) - 0.89 (0.86-0.92) 13 (0-51) 4.27e-11
rs58626212 chr2:135447055 TMEM163 A vs. G All: C 15 108,990 0.15 (A) 0.275 (A) 0.90 (0.86-0.95) 28 (0-61) 2.16e-05
rs71417530 chr2:135448651 TMEM163 G vs. A All: C 15 108,990 0.15 (G) - 0.91 (0.87-0.95) 26 (0-60) 3.16e-05
rs10928512 chr2:135451302 TMEM163 G vs. T All: C 15 108,990 0.408 (G) - 0.88 (0.85-0.91) 0 (0-36) 2.66e-13
rs12691870 chr2:135453545 TMEM163 C vs. T All: C 15 108,990 0.15 (C) 0.283 (C) 0.90 (0.87-0.94) 40 (0-67) 3.90e-06
rs12691871 chr2:135453916 TMEM163 C vs. T All: C 15 108,990 0.158 (C) 0.267 (C) 0.90 (0.87-0.94) 39 (0-67) 2.51e-06