Study: Nalls, 2014

Population Ethnicity Diagnosis Source # Cases (% women) # Controls (% women) AAO (sd) AAO range AAE (sd) AAE range Ctrl age (sd) Ctrl age range # Polymorphisms
Iceland (IPDGC-deCODE) C UKPDSBB CL 604 (48%) 4916 (57%) 62 (12) - - - 80 (8) - 9,406

Polymorphisms in this population [-]

Polymorphism Location (hg19) Gene Allele contrast Ethnicity # Studies # Samples 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs11579698 chr1:171666922 VAMP4 [-2378bp] T vs. C All: C 15 108,990 0.133 (T) 0.133 (T) 0.91 (0.88-0.95) 0 (0-53) 1.94e-05
rs11578179 chr1:171667160 VAMP4 [-2140bp] G vs. A All: C 15 108,990 - - 1.10 (1.05-1.14) 3 (0-55) 1.10e-05
rs6679354 chr1:171668002 VAMP4 [-1298bp] C vs. T All: C 15 108,990 0.133 (C) - 0.91 (0.87-0.95) 1 (0-54) 8.71e-06
rs10913508 chr1:171668479 VAMP4 [-821bp] C vs. T All: C 15 108,990 0.25 (C) 0.35 (C) 0.94 (0.90-0.97) 41 (0-68) 1.21e-04
rs12127026 chr1:171668813 VAMP4 [-487bp] G vs. A All: C 15 108,990 0.1 (G) 0.167 (G) 0.91 (0.88-0.95) 2 (0-55) 1.04e-05
rs10913511 chr1:171668951 VAMP4 [-349bp] A vs. G All: C 15 108,990 0.133 (A) 0.158 (A) 0.91 (0.88-0.95) 2 (0-55) 9.65e-06
rs1052676 chr1:171673054 VAMP4 C vs. T All: C 15 108,990 0.133 (C) 0.133 (C) 0.91 (0.88-0.95) 4 (0-55) 8.73e-06
rs10903 chr1:171673236 VAMP4 A vs. G All: C 15 108,990 0.133 (A) 0.158 (A) 0.91 (0.88-0.95) 3 (0-55) 8.58e-06
rs15655 chr1:171673272 VAMP4 A vs. C All: C 15 108,990 0.133 (A) 0.133 (A) 0.91 (0.88-0.95) 3 (0-55) 8.49e-06
rs11801846 chr1:171674241 VAMP4 T vs. G All: C 15 108,990 0.133 (T) 0.167 (T) 0.91 (0.87-0.95) 5 (0-56) 9.67e-06
rs11803174 chr1:171674338 VAMP4 T vs. C All: C 15 108,990 0.133 (T) 0.167 (T) 0.91 (0.87-0.95) 5 (0-56) 9.40e-06
rs12128536 chr1:171674607 VAMP4 C vs. T All: C 15 108,990 0.133 (C) 0.158 (C) 0.91 (0.88-0.95) 3 (0-55) 7.67e-06
rs6685742 chr1:171674774 VAMP4 A vs. G All: C 14 107,386 0.242 (A) 0.358 (A) 0.93 (0.90-0.97) 44 (0-70) 7.66e-05
rs11583530 chr1:171677177 VAMP4 C vs. T All: C 15 108,990 0.25 (C) - 0.93 (0.90-0.97) 38 (0-67) 8.42e-05
rs10913529 chr1:171679465 VAMP4 C vs. A All: C 15 108,990 0.133 (C) 0.167 (C) 0.91 (0.88-0.95) 2 (0-55) 7.16e-06
rs10913530 chr1:171679958 VAMP4 A vs. G All: C 15 108,990 0.25 (A) 0.367 (A) 0.93 (0.90-0.97) 40 (0-67) 7.99e-05
rs10798603 chr1:171680382 VAMP4 T vs. C All: C 15 108,990 0.25 (T) 0.358 (T) 0.93 (0.90-0.97) 39 (0-67) 8.63e-05
rs999685 chr1:171683194 VAMP4 T vs. C All: C 15 108,990 0.25 (T) 0.367 (T) 0.93 (0.90-0.97) 39 (0-67) 8.26e-05
rs11583920 chr1:171683611 VAMP4 G vs. A All: C 15 108,990 0.133 (G) 0.142 (G) 0.91 (0.88-0.95) 1 (0-54) 7.00e-06
rs763225 chr1:171684359 VAMP4 T vs. G All: C 15 108,990 0.25 (T) 0.367 (T) 0.93 (0.90-0.97) 39 (0-67) 7.19e-05
rs1001373 chr1:171684506 VAMP4 A vs. G All: C 15 108,990 0.133 (A) 0.167 (A) 0.91 (0.88-0.95) 1 (0-54) 6.91e-06
rs4468194 chr1:171684769 VAMP4 T vs. C All: C 15 108,990 0.25 (T) 0.367 (T) 0.93 (0.90-0.97) 39 (0-67) 8.27e-05
rs4342884 chr1:171684832 VAMP4 A vs. G All: C 15 108,990 0.25 (A) 0.367 (A) 0.93 (0.90-0.97) 38 (0-67) 7.80e-05
rs78213404 chr1:171685491 VAMP4 T vs. C All: C 15 108,990 0.133 (T) 0.15 (T) 0.91 (0.88-0.95) 1 (0-54) 6.45e-06
rs6673782 chr1:171685571 VAMP4 C vs. T All: C 15 108,990 0.25 (C) 0.367 (C) 0.93 (0.90-0.96) 39 (0-67) 3.55e-05
rs2227229 chr1:171686486 VAMP4 T vs. C All: C 15 108,990 0.25 (T) 0.367 (T) 0.93 (0.90-0.97) 38 (0-67) 7.33e-05
rs6700606 chr1:171687336 VAMP4 T vs. C All: C 15 108,990 0.25 (T) 0.358 (T) 0.93 (0.90-0.97) 39 (0-67) 6.78e-05
rs2073484 chr1:171687597 VAMP4 C vs. T All: C 15 108,990 0.25 (C) 0.375 (C) 0.93 (0.90-0.97) 39 (0-67) 6.67e-05
rs11808099 chr1:171688790 VAMP4 C vs. A All: C 15 108,990 0.142 (C) 0.167 (C) 0.91 (0.88-0.95) 1 (0-54) 5.80e-06
rs11806314 chr1:171689486 VAMP4 T vs. G All: C 15 108,990 0.25 (T) 0.375 (T) 0.93 (0.90-0.96) 39 (0-67) 5.09e-05
rs6668623 chr1:171691714 VAMP4 C vs. T All: C 15 108,990 - - 1.07 (1.03-1.11) 37 (0-66) 9.82e-05
rs6678890 chr1:171694566 VAMP4 A vs. C All: C 15 108,990 0.133 (A) 0.142 (A) 0.91 (0.88-0.95) 0 (0-53) 5.38e-06
rs12139610 chr1:171696112 VAMP4 C vs. T All: C 15 108,990 0.25 (C) - 0.93 (0.90-0.97) 36 (0-66) 8.81e-05
rs55670848 chr1:171697497 VAMP4 T vs. C All: C 15 108,990 0.133 (T) 0.167 (T) 0.91 (0.88-0.95) 0 (0-52) 5.71e-06
rs12045452 chr1:171698647 VAMP4 G vs. A All: C 15 108,990 0.25 (G) 0.358 (G) 0.93 (0.90-0.97) 38 (0-67) 7.39e-05
rs6682452 chr1:171698822 VAMP4 C vs. T All: C 15 108,990 0.25 (C) 0.333 (C) 0.93 (0.90-0.97) 38 (0-67) 8.13e-05
rs6674468 chr1:171698837 VAMP4 T vs. C All: C 15 108,990 0.25 (T) - 0.93 (0.90-0.97) 38 (0-67) 8.18e-05
rs6674688 chr1:171699030 VAMP4 T vs. C All: C 15 108,990 0.25 (T) 0.367 (T) 0.93 (0.90-0.97) 38 (0-67) 7.63e-05
rs6674774 chr1:171699078 VAMP4 A vs. C All: C 15 108,990 0.242 (A) 0.367 (A) 0.93 (0.90-0.97) 36 (0-66) 9.05e-05
rs6672082 chr1:171701129 VAMP4 A vs. G All: C 15 108,990 0.25 (A) 0.358 (A) 0.93 (0.90-0.97) 38 (0-66) 8.36e-05
rs10913559 chr1:171701487 VAMP4 T vs. C All: C 15 108,990 0.242 (T) 0.35 (T) 0.93 (0.90-0.96) 35 (0-65) 2.54e-05
rs6688447 chr1:171702864 VAMP4 T vs. C All: C 15 108,990 0.25 (T) 0.358 (T) 0.93 (0.90-0.97) 38 (0-66) 8.40e-05
rs10913565 chr1:171706706 VAMP4 G vs. A All: C 15 108,990 0.133 (G) 0.142 (G) 0.91 (0.88-0.95) 0 (0-50) 5.35e-06
rs2298914 chr1:171710405 VAMP4 T vs. C All: C 15 108,990 0.133 (T) 0.175 (T) 0.91 (0.88-0.95) 0 (0-51) 6.48e-06
rs12119232 chr1:171711152 VAMP4 C vs. A All: C 15 108,990 0.142 (C) 0.167 (C) 0.91 (0.88-0.95) 0 (0-52) 6.53e-06
rs10913578 chr1:171713468 VAMP4 [+2081bp] C vs. A All: C 15 108,990 0.167 (C) 0.2 (C) 0.93 (0.90-0.96) 0 (0-50) 7.22e-05
rs16843230 chr1:171713824 VAMP4 [+2437bp] C vs. A All: C 15 108,990 0.158 (C) 0.192 (C) 0.93 (0.90-0.96) 0 (0-51) 7.28e-05
rs17649068 chr1:171713893 VAMP4 [+2506bp] T vs. C All: C 15 108,990 0.133 (T) 0.2 (T) 0.91 (0.88-0.95) 0 (0-51) 9.30e-06
rs112293138 chr1:171714002 VAMP4 [+2615bp] G vs. T All: C 15 108,990 0.133 (G) 0.2 (G) 0.91 (0.88-0.95) 0 (0-51) 9.07e-06
rs112754220 chr1:171714111 VAMP4 [+2724bp] C vs. T All: C 15 108,990 0.167 (C) 0.2 (C) 0.92 (0.89-0.96) 0 (0-47) 5.49e-05