Study: Nalls, 2014

Population Ethnicity Diagnosis Source # Cases (% women) # Controls (% women) AAO (sd) AAO range AAE (sd) AAE range Ctrl age (sd) Ctrl age range # Polymorphisms
Netherlands (IPDGC) C UKPDSBB CL, PO 744 (36%) 2019 (64%) 56 (12) - - - 56 (6) - 9,595

Polymorphisms in this population [-]

Polymorphism Location (hg19) Gene Allele contrast Ethnicity # Studies # Samples 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs12986109 chr19:2360967 TMPRSS9 [-28802bp] A vs. C All: C 13 99,286 0.342 (A) 0.283 (C) 1.13 (1.08-1.18) 49 (3-73) 7.27e-08
rs62120679 chr19:2363319 TMPRSS9 [-26450bp] T vs. C All: C 13 99,286 0.292 (T) 0.3 (C) 1.14 (1.09-1.19) 47 (0-72) 2.52e-09
rs144194380 chr19:2381693 TMPRSS9 [-8076bp] G vs. T All: C 13 99,964 - - 1.00 (0.92-1.09) 4 (0-58) 0.989
rs72971404 chr19:2387907 TMPRSS9 [-1862bp] A vs. G All: C 13 99,964 0.05 (A) 0.042 (A) 0.99 (0.91-1.08) 8 (0-46) 0.768
rs72971413 chr19:2388984 TMPRSS9 [-785bp] T vs. C All: C 12 96,015 0.05 (T) - 0.99 (0.91-1.08) 17 (0-56) 0.764
rs72971463 chr19:2400202 TMPRSS9 G vs. A All: C 13 99,286 0.067 (G) 0.017 (G) 0.97 (0.89-1.05) 0 (0-49) 0.400
rs72971464 chr19:2402116 TMPRSS9 T vs. C All: C 12 96,015 0.033 (T) - 0.93 (0.86-1.02) 12 (0-52) 0.126
rs113465793 chr19:18556417 ELL C vs. A All: C 15 108,990 0.183 (C) 0.042 (C) 0.91 (0.87-0.95) 0 (0-38) 7.76e-05
rs2303693 chr19:18557673 ELL T vs. C All: C 15 108,990 0.167 (T) 0.058 (T) 0.91 (0.86-0.95) 0 (0-31) 7.09e-05
rs2303694 chr19:18562438 ELL T vs. C All: C 15 108,990 0.183 (T) 0.058 (T) 0.91 (0.87-0.95) 0 (0-32) 1.08e-04
rs79888481 chr19:18569957 ELL A vs. G All: C 15 108,990 0.183 (A) 0.058 (A) 0.91 (0.87-0.96) 0 (0-31) 1.20e-04
rs140225207 chr19:29595383 intergenic G vs. A All: C 7 19,682 - - 0.57 (0.45-0.72) 42 (0-76) 4.95e-06
rs149593455 chr19:29601942 intergenic C vs. T All: C 7 19,682 - - 0.56 (0.44-0.72) 25 (0-67) 4.06e-06
rs142952037 chr19:29609432 intergenic T vs. C All: C 7 19,682 - - 0.57 (0.44-0.72) 27 (0-69) 5.26e-06
rs148571443 chr19:29629476 intergenic C vs. T All: C 7 19,682 - - 0.56 (0.44-0.71) 22 (0-65) 3.05e-06
rs4802124 chr19:42104609 CEACAM21 [+11412bp] A vs. G All: C 15 108,990 - - 0.93 (0.89-0.96) 32 (0-63) 8.91e-05
rs3848566 chr19:42105482 CEACAM21 [+12285bp] C vs. T All: C 15 108,990 0.233 (C) 0.433 (C) 1.08 (1.04-1.12) 27 (0-61) 2.12e-04
rs1029804 chr19:42107207 CEACAM21 [+14010bp] G vs. T All: C 14 107,386 0.233 (G) 0.425 (G) 1.09 (1.05-1.13) 17 (0-55) 2.39e-05
rs16988130 chr20:2824849 VPS16 G vs. A All: C 15 108,990 0.275 (G) 0.367 (G) 0.93 (0.90-0.97) 0 (0-35) 2.71e-04
rs7268763 chr20:2828596 VPS16 G vs. A All: C 15 108,990 0.292 (G) 0.467 (G) 0.93 (0.90-0.96) 0 (0-37) 9.32e-05
rs6132979 chr20:2833939 VPS16 A vs. G All: C 15 108,990 0.275 (A) 0.342 (A) 0.94 (0.90-0.97) 0 (0-32) 5.15e-04
rs1324392 chr20:2857854 PTPRA G vs. A All: C 15 108,990 0.267 (G) 0.342 (G) 0.94 (0.91-0.98) 0 (0-25) 0.001
rs6138937 chr20:2882931 PTPRA C vs. T All: C 15 108,990 0.275 (C) 0.35 (C) 0.94 (0.91-0.98) 0 (0-18) 0.001
rs6138952 chr20:2901540 PTPRA G vs. A All: C 15 108,990 0.267 (G) 0.342 (G) 0.94 (0.91-0.98) 0 (0-16) 0.001
rs58241213 chr20:3148720 UBOX5 [+7878bp] G vs. A All: C 15 108,990 0.5 (G) 0.342 (G) 1.10 (1.06-1.15) 44 (0-70) 9.89e-07
rs35420316 chr20:3151345 UBOX5 [+10503bp] G vs. A All: C 15 108,990 - - 1.10 (1.06-1.14) 42 (0-69) 5.72e-07
rs55785911 chr20:3153503 UBOX5 [+12661bp] A vs. G All: C 21 120,238 0.417 (A) 0.392 (G) 0.91 (0.88-0.94) 29 (0-58) 3.30e-10
rs55800553 chr20:3154525 UBOX5 [+13683bp] T vs. C All: C 15 108,990 0.425 (T) 0.417 (C) 0.90 (0.86-0.94) 53 (15-74) 3.47e-07
rs4813629 chr20:3155375 UBOX5 [+14533bp] A vs. G All: C 15 108,990 0.45 (A) 0.283 (G) 0.92 (0.89-0.96) 39 (0-67) 6.96e-06
rs67820322 chr20:3161010 DDRGK1 [-9986bp] T vs. C All: C 15 108,990 0.467 (T) 0.283 (C) 0.91 (0.88-0.94) 37 (0-66) 5.33e-08
rs8123287 chr20:3163565 DDRGK1 [-7431bp] C vs. T All: C 15 108,990 - - 0.93 (0.91-0.97) 23 (0-58) 4.01e-05
rs7270155 chr20:3163883 DDRGK1 [-7113bp] C vs. A All: C 15 108,990 - - 0.94 (0.91-0.97) 24 (0-59) 4.39e-05
rs2295545 chr20:3164686 DDRGK1 [-6310bp] C vs. T All: C 15 108,990 0.458 (C) 0.283 (T) 0.91 (0.89-0.94) 39 (0-67) 4.76e-08
rs8119139 chr20:3165887 DDRGK1 [-5109bp] G vs. C All: C 15 108,990 0.442 (G) 0.317 (C) 0.91 (0.87-0.94) 39 (0-67) 2.93e-08
rs8125675 chr20:3165888 DDRGK1 [-5108bp] G vs. A All: C 15 108,990 0.458 (G) 0.317 (A) 0.91 (0.87-0.94) 39 (0-67) 2.95e-08
rs4815573 chr20:3166671 DDRGK1 [-4325bp] C vs. T All: C 15 108,990 - - 1.09 (1.06-1.13) 38 (0-66) 5.53e-08
rs8116557 chr20:3167700 DDRGK1 [-3296bp] A vs. G All: C 15 108,990 - - 1.09 (1.06-1.13) 38 (0-66) 5.43e-08
rs8122372 chr20:3167857 DDRGK1 [-3139bp] G vs. A All: C 15 108,990 - - 1.09 (1.06-1.13) 38 (0-66) 5.88e-08
rs8118008 chr20:3168166 DDRGK1 [-2830bp] A vs. G All: C 15 108,990 - - 1.11 (1.07-1.15) 33 (0-64) 2.32e-08
rs58046886 chr20:3168430 DDRGK1 [-2566bp] A vs. G All: C 15 108,990 - - 1.09 (1.06-1.13) 38 (0-66) 5.99e-08
rs56981937 chr20:3168631 DDRGK1 [-2365bp] A vs. G All: C 15 108,990 - - 1.09 (1.06-1.13) 34 (0-64) 2.31e-07
rs1056881 chr20:3169729 DDRGK1 [-1267bp] A vs. G All: C 15 108,990 0.442 (A) 0.292 (G) 0.91 (0.88-0.94) 33 (0-64) 5.84e-08
rs4815574 chr20:3170172 DDRGK1 [-824bp] C vs. T All: C 15 108,990 0.442 (C) 0.283 (T) 0.92 (0.89-0.95) 32 (0-63) 1.44e-07
rs2295546 chr20:3171628 DDRGK1 A vs. G All: C 15 108,990 0.367 (A) 0.383 (A) 0.93 (0.90-0.97) 39 (0-67) 6.70e-05
rs2295547 chr20:3172246 DDRGK1 C vs. A All: C 15 108,990 0.367 (C) 0.392 (C) 0.93 (0.90-0.97) 39 (0-67) 6.91e-05
rs67249524 chr20:3172584 DDRGK1 G vs. T All: C 15 108,990 0.367 (G) 0.383 (G) 0.93 (0.90-0.97) 39 (0-67) 6.98e-05
rs8119219 chr20:3173907 DDRGK1 C vs. T All: C 15 108,990 0.367 (C) 0.383 (C) 0.93 (0.90-0.97) 39 (0-67) 6.21e-05
rs6515773 chr20:3174105 DDRGK1 C vs. T All: C 15 108,990 - - 1.07 (1.04-1.11) 39 (0-67) 8.11e-05
rs7274047 chr20:3174268 DDRGK1 C vs. T All: C 15 108,990 - - 1.07 (1.04-1.11) 39 (0-67) 6.30e-05
rs2295548 chr20:3175260 DDRGK1 T vs. C All: C 15 108,990 0.367 (T) 0.383 (T) 0.93 (0.90-0.97) 39 (0-67) 6.45e-05