Study: Nalls, 2014

Population Ethnicity Diagnosis Source # Cases (% women) # Controls (% women) AAO (sd) AAO range AAE (sd) AAE range Ctrl age (sd) Ctrl age range # Polymorphisms
USA (IPDGC-NIA) C UKPDSBB CL 937 (40%) 1896 (53%) 58 (13) - - - 63 (10) - 9,622

Polymorphisms in this population [-]

Polymorphism Location (hg19) Gene Allele contrast Ethnicity # Studies # Samples 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs886882 chr19:2322085 LSM7 G vs. A All: C 14 103,235 0.242 (G) 0.3 (A) 1.08 (1.04-1.12) 51 (10-74) 2.16e-05
rs876692 chr19:2322165 LSM7 A vs. G All: C 13 99,286 0.05 (A) 0.467 (A) 1.21 (1.12-1.30) 34 (0-66) 1.33e-06
rs56291613 chr19:2323197 LSM7 A vs. G All: C 14 103,235 0.4 (A) 0.308 (G) 1.08 (1.04-1.12) 20 (0-57) 1.35e-05
rs10404826 chr19:2324384 LSM7 A vs. G All: C 14 103,235 0.25 (A) 0.45 (A) 1.10 (1.05-1.14) 49 (5-72) 1.08e-05
rs10402629 chr19:2324458 LSM7 G vs. A All: C 20 114,483 0.242 (G) 0.45 (G) 1.07 (1.03-1.11) 47 (10-68) 1.20e-04
rs8100786 chr19:2324847 LSM7 A vs. G All: C 14 103,235 0.25 (A) 0.45 (A) 1.09 (1.05-1.14) 46 (0-71) 1.61e-05
rs12983575 chr19:2325172 LSM7 A vs. C All: C 14 103,235 0.242 (A) 0.45 (A) 1.09 (1.05-1.14) 48 (4-72) 1.32e-05
rs12977961 chr19:2326897 LSM7 C vs. T All: C 14 103,235 0.425 (C) 0.283 (T) 1.08 (1.05-1.12) 18 (0-56) 5.61e-06
rs12976273 chr19:2326902 LSM7 G vs. A All: C 14 103,235 0.425 (G) 0.275 (A) 1.08 (1.05-1.12) 18 (0-56) 5.62e-06
rs10427098 chr19:2327403 LSM7 A vs. G All: C 14 103,235 0.258 (A) - 1.10 (1.05-1.14) 47 (2-72) 7.30e-06
rs11666344 chr19:2328281 LSM7 G vs. A All: C 14 103,235 0.242 (G) 0.458 (G) 1.10 (1.05-1.14) 47 (2-72) 5.62e-06
rs3746285 chr19:2339949 LSM7 [+11330bp] T vs. C All: C 14 103,235 0.275 (T) 0.317 (C) 1.11 (1.07-1.15) 43 (0-70) 4.32e-08
rs3746289 chr19:2343142 LSM7 [+14523bp] A vs. G All: C 14 103,235 0.275 (A) 0.333 (G) 1.12 (1.08-1.17) 49 (6-73) 1.01e-08
rs11084936 chr19:2346440 LSM7 [+17821bp] A vs. G All: C 14 103,235 - - 0.92 (0.89-0.95) 26 (0-61) 2.77e-07
rs7249727 chr19:2346730 LSM7 [+18111bp] A vs. G All: C 14 103,235 0.292 (A) 0.317 (G) 1.09 (1.06-1.14) 33 (0-65) 1.74e-06
rs8104896 chr19:2352393 LSM7 [+23774bp] T vs. G All: C 14 103,235 0.258 (T) 0.333 (G) 1.12 (1.08-1.17) 47 (1-72) 8.92e-09
rs1128402 chr19:2353150 LSM7 [+24531bp] A vs. C All: C 14 103,235 0.283 (A) 0.342 (C) 1.12 (1.08-1.17) 46 (0-71) 8.40e-09
rs10420958 chr19:2353368 LSM7 [+24749bp] A vs. G All: C 14 103,235 0.475 (A) 0.308 (A) 0.92 (0.89-0.95) 26 (0-61) 4.93e-07
rs10402757 chr19:2353372 LSM7 [+24753bp] C vs. T All: C 14 103,235 0.475 (C) 0.308 (C) 0.92 (0.89-0.95) 26 (0-61) 1.38e-06
rs62119753 chr19:2355428 LSM7 [+26809bp] C vs. A All: C 14 103,235 0.458 (C) 0.3 (A) 1.09 (1.05-1.13) 25 (0-60) 7.89e-07
rs62119754 chr19:2356277 LSM7 [+27658bp] A vs. G All: C 14 103,235 0.458 (A) 0.3 (G) 1.09 (1.05-1.12) 24 (0-60) 8.12e-07
rs12460552 chr19:2356475 LSM7 [+27856bp] A vs. G All: C 14 103,235 0.458 (A) 0.3 (G) 1.09 (1.05-1.12) 24 (0-60) 8.11e-07
rs114089710 chr19:2357933 LSM7 [+29314bp] C vs. T All: C 14 103,235 0.383 (C) 0.325 (T) 1.09 (1.06-1.13) 30 (0-63) 5.28e-07
rs12978670 chr19:2358485 LSM7 [+29866bp] C vs. T All: C 14 103,235 0.458 (C) 0.3 (T) 1.09 (1.05-1.13) 27 (0-61) 4.72e-07
rs757321 chr19:2360011 TMPRSS9 [-29758bp] C vs. T All: C 14 103,235 0.458 (C) 0.283 (T) 1.08 (1.05-1.12) 26 (0-61) 2.97e-06
rs730960 chr19:2360806 TMPRSS9 [-28963bp] G vs. A All: C 14 103,235 0.45 (G) 0.308 (A) 1.08 (1.05-1.12) 26 (0-61) 3.05e-06
rs757322 chr19:2360854 TMPRSS9 [-28915bp] A vs. G All: C 14 103,235 0.45 (A) 0.3 (G) 1.08 (1.05-1.12) 26 (0-61) 3.40e-06
rs12977404 chr19:2360960 TMPRSS9 [-28809bp] T vs. G All: C 13 99,964 0.467 (T) 0.275 (G) 1.09 (1.05-1.13) 34 (0-66) 4.55e-06
rs12986109 chr19:2360967 TMPRSS9 [-28802bp] A vs. C All: C 13 99,286 0.342 (A) 0.283 (C) 1.13 (1.08-1.18) 49 (3-73) 7.27e-08
rs62120679 chr19:2363319 TMPRSS9 [-26450bp] T vs. C All: C 13 99,286 0.292 (T) 0.3 (C) 1.14 (1.09-1.19) 47 (0-72) 2.52e-09
rs144194380 chr19:2381693 TMPRSS9 [-8076bp] G vs. T All: C 13 99,964 - - 1.00 (0.92-1.09) 4 (0-58) 0.989
rs72971404 chr19:2387907 TMPRSS9 [-1862bp] A vs. G All: C 13 99,964 0.05 (A) 0.042 (A) 0.99 (0.91-1.08) 8 (0-46) 0.768
rs72971413 chr19:2388984 TMPRSS9 [-785bp] T vs. C All: C 12 96,015 0.05 (T) - 0.99 (0.91-1.08) 17 (0-56) 0.764
rs72971463 chr19:2400202 TMPRSS9 G vs. A All: C 13 99,286 0.067 (G) 0.017 (G) 0.97 (0.89-1.05) 0 (0-49) 0.400
rs72971464 chr19:2402116 TMPRSS9 T vs. C All: C 12 96,015 0.033 (T) - 0.93 (0.86-1.02) 12 (0-52) 0.126
rs113465793 chr19:18556417 ELL C vs. A All: C 15 108,990 0.183 (C) 0.042 (C) 0.91 (0.87-0.95) 0 (0-38) 7.76e-05
rs2303693 chr19:18557673 ELL T vs. C All: C 15 108,990 0.167 (T) 0.058 (T) 0.91 (0.86-0.95) 0 (0-31) 7.09e-05
rs2303694 chr19:18562438 ELL T vs. C All: C 15 108,990 0.183 (T) 0.058 (T) 0.91 (0.87-0.95) 0 (0-32) 1.08e-04
rs79888481 chr19:18569957 ELL A vs. G All: C 15 108,990 0.183 (A) 0.058 (A) 0.91 (0.87-0.96) 0 (0-31) 1.20e-04
rs140225207 chr19:29595383 intergenic G vs. A All: C 7 19,682 - - 0.57 (0.45-0.72) 42 (0-76) 4.95e-06
rs149593455 chr19:29601942 intergenic C vs. T All: C 7 19,682 - - 0.56 (0.44-0.72) 25 (0-67) 4.06e-06
rs142952037 chr19:29609432 intergenic T vs. C All: C 7 19,682 - - 0.57 (0.44-0.72) 27 (0-69) 5.26e-06
rs148571443 chr19:29629476 intergenic C vs. T All: C 7 19,682 - - 0.56 (0.44-0.71) 22 (0-65) 3.05e-06
rs4802124 chr19:42104609 CEACAM21 [+11412bp] A vs. G All: C 15 108,990 - - 0.93 (0.89-0.96) 32 (0-63) 8.91e-05
rs3848566 chr19:42105482 CEACAM21 [+12285bp] C vs. T All: C 15 108,990 0.233 (C) 0.433 (C) 1.08 (1.04-1.12) 27 (0-61) 2.12e-04
rs1029804 chr19:42107207 CEACAM21 [+14010bp] G vs. T All: C 14 107,386 0.233 (G) 0.425 (G) 1.09 (1.05-1.13) 17 (0-55) 2.39e-05
rs16988130 chr20:2824849 VPS16 G vs. A All: C 15 108,990 0.275 (G) 0.367 (G) 0.93 (0.90-0.97) 0 (0-35) 2.71e-04
rs7268763 chr20:2828596 VPS16 G vs. A All: C 15 108,990 0.292 (G) 0.467 (G) 0.93 (0.90-0.96) 0 (0-37) 9.32e-05
rs6132979 chr20:2833939 VPS16 A vs. G All: C 15 108,990 0.275 (A) 0.342 (A) 0.94 (0.90-0.97) 0 (0-32) 5.15e-04
rs1324392 chr20:2857854 PTPRA G vs. A All: C 15 108,990 0.267 (G) 0.342 (G) 0.94 (0.91-0.98) 0 (0-25) 0.001