Top results (loci containing at least one meta-analysis result with P < 5.00e-08)

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs356182 chr4:90626111 SNCA [-19139bp] All: C 120,238 21 G vs. A 0.417 (G) 0.375 (A) 1.34 (1.30-1.38) 50 (17-70) 1.85e-82
rs17649553 chr17:43994648 MAPT All: C 114,483 20 T vs. C 0.217 (T) - 0.77 (0.75-0.80) 0 (0-37) 6.11e-49
rs34311866 chr4:951947 TMEM175 All: C 120,238 21 C vs. T 0.15 (C) 0.075 (C) 1.26 (1.22-1.31) 52 (21-71) 6.00e-41
rs71628662 chr1:155359992 ASH1L All: C 110,323 18 T vs. C - - 0.52 (0.46-0.58) 0 (-) 6.86e-28
rs12637471 chr3:182762437 MCCC1 All: C 120,238 21 A vs. G 0.242 (A) 0.417 (G) 0.84 (0.81-0.87) 35 (0-62) 5.38e-22
rs1955337 chr2:169129145 STK39 [+24494bp] All: C 120,238 21 T vs. G 0.083 (T) 0.317 (T) 1.21 (1.16-1.26) 17 (0-51) 1.67e-20
rs6430538 chr2:135539967 intergenic All: C 120,238 21 T vs. C 0.408 (T) 0.025 (C) 0.88 (0.85-0.90) 0 (0-45) 3.35e-19
rs11724635 chr4:15737101 BST1 All: C 120,238 21 C vs. A 0.433 (C) 0.458 (A) 0.89 (0.87-0.91) 8 (0-42) 4.26e-17
rs823118 chr1:205723572 NUCKS1 [+4168bp] All: C 120,238 21 C vs. T 0.45 (C) 0.417 (T) 0.89 (0.87-0.92) 41 (0-65) 1.96e-16
rs1555399 chr14:67984370 TMEM229B All: C 108,990 15 T vs. A 0.475 (T) 0.45 (T) 1.15 (1.11-1.19) 97 (96-98) 5.70e-16
rs76904798 chr12:40614434 LRRK2 All: C 120,238 21 T vs. C 0.158 (T) - 1.16 (1.11-1.20) 0 (0-47) 4.86e-14
rs199347 chr7:23293746 GPNMB All: C 120,238 21 G vs. A 0.392 (G) 0.325 (G) 0.90 (0.87-0.92) 11 (0-46) 5.62e-14
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
rs2414739 chr15:61994134 intergenic All: C 120,238 21 G vs. A 0.283 (G) 0.183 (G) 0.90 (0.87-0.92) 19 (0-52) 3.59e-12
rs14235 chr16:31121793 BCKDK All: C 120,238 21 A vs. G 0.45 (A) 0.092 (G) 1.10 (1.07-1.14) 31 (0-59) 3.63e-12
rs329648 chr11:133765367 MIR4697 [-3032bp] All: C 120,238 21 T vs. C 0.333 (T) 0.267 (T) 1.11 (1.07-1.14) 0 (0-47) 8.05e-12
rs117896735 chr10:121536327 INPP5F All: C 104,595 13 A vs. G 0.017 (A) - 1.77 (1.50-2.08) 15 (0-54) 1.21e-11
rs6812193 chr4:77198986 FAM47E All: C 120,238 21 T vs. C 0.392 (T) 0.092 (T) 0.91 (0.88-0.93) 36 (0-62) 1.85e-11
rs12456492 chr18:40673380 RIT2 All: C 120,238 21 G vs. A 0.375 (G) 0.4 (G) 1.10 (1.07-1.14) 17 (0-51) 2.15e-11
rs11060180 chr12:123303586 CCDC62 All: C 105,818 17 G vs. A 0.483 (G) 0.208 (G) 0.91 (0.88-0.93) 21 (0-56) 3.08e-11
rs7155501 chr14:55347827 GCH1 All: C 108,990 15 A vs. G - - 1.12 (1.08-1.15) 9 (0-46) 1.25e-10
rs10797576 chr1:232664611 SIPA1L2 All: C 120,238 21 T vs. C 0.092 (T) 0.092 (T) 1.13 (1.09-1.18) 0 (0-41) 1.76e-10
rs55785911 chr20:3153503 UBOX5 [+12661bp] All: C 120,238 21 A vs. G 0.417 (A) 0.392 (G) 0.91 (0.88-0.94) 29 (0-58) 3.30e-10
rs62120679 chr19:2363319 TMPRSS9 [-26450bp] All: C 99,286 13 T vs. C 0.292 (T) 0.3 (C) 1.14 (1.09-1.19) 47 (0-72) 2.52e-09
rs3793947 chr11:83544472 DLG2 All: C 108,990 15 A vs. G 0.375 (A) 0.442 (A) 0.91 (0.88-0.94) 0 (0-19) 2.59e-08
rs591323 chr8:16697091 intergenic All: C 120,238 21 A vs. G 0.325 (A) 0.383 (A) 0.91 (0.89-0.94) 0 (0-43) 3.17e-08