HLA-DQA1, chr6:32595956-32614839 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs532965 chr6:32577973 HLA-DQA1 [-17983bp] All: C 105,041 14 G vs. T 0.233 (G) 0.167 (G) 0.81 (0.77-0.86) 35 (0-66) 3.16e-12
Meta_image?name=rs532965

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6457614 chr6:32651900 HLA-DQB1 [+15740bp] C - 4 T vs. G 0.133 (G) 0.033 (G) >1 (-) 9 (-) >0.05
rs3134976 chr6:32652305 HLA-DQB1 [+16145bp] C - 4 A vs. C 0.283 (A) 0.125 (A) >1 (-) 0 (-) >0.05
rs9275268 chr6:32662433 HLA-DQB1 [+26273bp] C - 12 A vs. G - - >1 (-) 26 (-) >0.05
rs2858328 chr6:32658911 HLA-DQB1 [+22751bp] C - 11 T vs. C - - <1 (-) 39 (-) >0.05
rs9274711 chr6:32637289 HLA-DQB1 [+1129bp] C - 4 A vs. T - - >1 (-) 12 (-) >0.05
rs3134975 chr6:32652581 HLA-DQB1 [+16421bp] C - 3 T vs. C 0.3 (T) 0.125 (T) >1 (-) 0 (-) >0.05
rs9271131 chr6:32576923 HLA-DQA1 [-19033bp] C - 4 T vs. C - - >1 (-) 52 (-) >0.05
rs35305251 chr6:32576037 HLA-DRB1 [+18412bp] C - 4 C vs. G 0.142 (C) - <1 (-) 19 (-) >0.05
rs9271123 chr6:32576838 HLA-DQA1 [-19118bp] C - 4 T vs. C - - <1 (-) 53 (-) >0.05
rs9271130 chr6:32576894 HLA-DQA1 [-19062bp] C - 4 A vs. T - - >1 (-) 52 (-) >0.05
rs35515288 chr6:32576356 HLA-DRB1 [+18731bp] C - 4 T vs. C 0.142 (C) 0.025 (C) >1 (-) 19 (-) >0.05
rs2647006 chr6:32660582 HLA-DQB1 [+24422bp] C - 11 A vs. C 0.475 (C) - >1 (-) 35 (-) >0.05
rs9275267 chr6:32662425 HLA-DQB1 [+26265bp] C - 12 A vs. G - - >1 (-) 27 (-) >0.05
rs9275240 chr6:32660722 HLA-DQB1 [+24562bp] C - 12 T vs. C 0.45 (T) 0.492 (T) <1 (-) 18 (-) >0.05
rs2647025 chr6:32635949 HLA-DQB1 C - 4 A vs. G 0.308 (A) 0.417 (A) <1 (-) 0 (-) >0.05
rs1281937 chr6:32578143 HLA-DQA1 [-17813bp] C - 5 T vs. C 0.158 (C) 0.392 (C) <1 (-) 0 (-) >0.05
rs4713586 chr6:32659582 HLA-DQB1 [+23422bp] C - 8 A vs. G 0.017 (G) 0.125 (G) <1 (-) 0 (-) >0.05
rs28533694 chr6:32587235 HLA-DQA1 [-8721bp] C - 3 T vs. C - - <1 (-) 0 (-) >0.05
rs9275241 chr6:32660741 HLA-DQB1 [+24581bp] C - 12 T vs. G 0.458 (T) 0.483 (T) <1 (-) 20 (-) >0.05
rs9271122 chr6:32576821 HLA-DQA1 [-19135bp] C - 4 A vs. G - - <1 (-) 53 (-) >0.05
rs4713588 chr6:32659502 HLA-DQB1 [+23342bp] C - 8 A vs. C - - >1 (-) 0 (-) >0.05
rs9275249 chr6:32661137 HLA-DQB1 [+24977bp] C - 10 A vs. C 0.3 (C) - >1 (-) 72 (-) >0.05
rs9271136 chr6:32577011 HLA-DQA1 [-18945bp] C - 4 A vs. G - - >1 (-) 53 (-) >0.05
rs9275234 chr6:32660586 HLA-DQB1 [+24426bp] C - 11 T vs. C - - <1 (-) 15 (-) >0.05
rs35399661 chr6:32590990 HLA-DQA1 [-4966bp] C - 8 T vs. C 0.192 (C) 0.142 (C) <1 (-) 51 (-) >0.05
rs9275222 chr6:32659516 HLA-DQB1 [+23356bp] C - 11 A vs. T - - >1 (-) 29 (-) >0.05
rs9275080 chr6:32648627 HLA-DQB1 [+12467bp] C - 4 T vs. C 0.258 (T) 0.367 (T) <1 (-) 24 (-) >0.05
rs9275079 chr6:32648614 HLA-DQB1 [+12454bp] C - 4 A vs. C 0.258 (C) 0.367 (C) >1 (-) 24 (-) >0.05
rs28707773 chr6:32572278 HLA-DRB1 [+14653bp] C - 4 A vs. C 0.158 (A) - <1 (-) 22 (-) >0.05
rs9274662 chr6:32636494 HLA-DQB1 [+334bp] C - 4 T vs. C 0.45 (T) 0.15 (T) >1 (-) 47 (-) >0.05
rs17843599 chr6:32620142 HLA-DQA1 [+5303bp] C - 3 A vs. T - - <1 (-) 0 (-) >0.05
rs9274670 chr6:32636597 HLA-DQB1 [+437bp] C - 4 T vs. G 0.483 (G) 0.15 (T) >1 (-) 46 (-) >0.05
rs35424967 chr6:32591129 HLA-DQA1 [-4827bp] C - 8 A vs. G 0.192 (A) 0.142 (A) >1 (-) 50 (-) >0.05
rs36202958 chr6:32576368 HLA-DRB1 [+18743bp] C - 4 T vs. C 0.142 (T) 0.025 (T) <1 (-) 22 (-) >0.05
rs9271135 chr6:32577002 HLA-DQA1 [-18954bp] C - 4 A vs. T - - >1 (-) 52 (-) >0.05
rs17612816 chr6:32620469 HLA-DQA1 [+5630bp] C - 3 T vs. G 0.483 (G) 0.475 (G) >1 (-) 0 (-) >0.05
rs28582842 chr6:32572234 HLA-DRB1 [+14609bp] C - 4 A vs. G 0.158 (A) 0.017 (A) <1 (-) 23 (-) >0.05
rs35014460 chr6:32591106 HLA-DQA1 [-4850bp] C - 8 T vs. C 0.192 (C) 0.142 (C) <1 (-) 50 (-) >0.05
rs200419915 chr6:32662222 HLA-DQB1 [+26062bp] C - 12 T vs. C - - <1 (-) 33 (-) >0.05
rs2516050 chr6:32570352 HLA-DRB1 [+12727bp] C - 4 A vs. G 0.217 (A) 0.375 (G) >1 (-) 33 (-) >0.05
rs17843617 chr6:32620690 HLA-DQA1 [+5851bp] C - 3 T vs. G 0.45 (T) 0.467 (T) <1 (-) 0 (-) >0.05
rs17612831 chr6:32620507 HLA-DQA1 [+5668bp] C - 3 A vs. T 0.425 (T) 0.458 (A) >1 (-) 0 (-) >0.05
rs73728237 chr6:32581628 HLA-DQA1 [-14328bp] C - 3 T vs. C 0.017 (T) 0.117 (T) <1 (-) 9 (-) >0.05
rs6457615 chr6:32651964 HLA-DQB1 [+15804bp] C - 4 T vs. C 0.133 (C) 0.033 (C) >1 (-) 54 (-) >0.05
rs34811813 chr6:32576265 HLA-DRB1 [+18640bp] C - 4 T vs. G 0.15 (T) 0.025 (T) <1 (-) 23 (-) >0.05
rs9275247 chr6:32661015 HLA-DQB1 [+24855bp] C - 12 T vs. C 0.458 (C) 0.483 (T) >1 (-) 20 (-) >0.05
rs36202959 chr6:32576324 HLA-DRB1 [+18699bp] C - 4 C vs. G 0.142 (G) 0.025 (G) >1 (-) 23 (-) >0.05
rs9275246 chr6:32661003 HLA-DQB1 [+24843bp] C - 12 A vs. C 0.467 (A) 0.425 (C) <1 (-) 20 (-) >0.05
rs9275083 chr6:32648694 HLA-DQB1 [+12534bp] C - 4 T vs. C 0.233 (C) 0.383 (C) >1 (-) 19 (-) >0.05
rs17843609 chr6:32620513 HLA-DQA1 [+5674bp] C - 3 T vs. C 0.425 (C) 0.467 (T) >1 (-) 0 (-) >0.05

Association studies for this region [+]