HLA-DQA1, chr6:32595956-32614839 +/- 50000 base pairs
View on:

Most significant meta-analysis in this region
Append your own data and create meta-analysis

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs532965 chr6:32577973 HLA-DQA1 [-17983bp] All: C 105,041 14 G vs. T 0.233 (G) 0.167 (G) 0.81 (0.77-0.86) 35 (0-66) 3.16e-12
Meta_image?name=rs532965

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs28746965 chr6:32653136 HLA-DQB1 [+16976bp] C - 6 A vs. G 0.167 (G) 0.308 (G) <1 (-) 23 (-) >0.05
rs9271269 chr6:32580820 HLA-DQA1 [-15136bp] C - 4 T vs. G 0.283 (T) 0.417 (T) >1 (-) 8 (-) >0.05
rs5004276 chr6:32582332 HLA-DQA1 [-13624bp] C - 4 A vs. G 0.283 (A) 0.408 (A) >1 (-) 5 (-) >0.05
rs28747007 chr6:32654475 HLA-DQB1 [+18315bp] C - 6 A vs. T 0.183 (A) 0.308 (A) >1 (-) 22 (-) >0.05
rs5004277 chr6:32582354 HLA-DQA1 [-13602bp] C - 4 T vs. C 0.283 (T) 0.417 (T) >1 (-) 6 (-) >0.05
rs2858859 chr6:32582275 HLA-DQA1 [-13681bp] C - 4 A vs. G 0.283 (A) 0.408 (A) >1 (-) 5 (-) >0.05
rs7451962 chr6:32582435 HLA-DQA1 [-13521bp] C - 4 A vs. G 0.258 (A) 0.417 (A) >1 (-) 6 (-) >0.05
rs28746953 chr6:32652823 HLA-DQB1 [+16663bp] C - 6 A vs. G 0.125 (G) 0.267 (G) <1 (-) 28 (-) >0.05
rs28746998 chr6:32654246 HLA-DQB1 [+18086bp] C - 6 T vs. G 0.167 (T) 0.283 (T) >1 (-) 23 (-) >0.05
rs28746999 chr6:32654258 HLA-DQB1 [+18098bp] C - 6 A vs. G 0.158 (A) 0.275 (A) >1 (-) 23 (-) >0.05
rs9271326 chr6:32582527 HLA-DQA1 [-13429bp] C - 4 T vs. C 0.15 (T) 0.367 (T) >1 (-) 0 (-) >0.05
rs28746972 chr6:32653406 HLA-DQB1 [+17246bp] C - 6 A vs. G 0.167 (G) 0.283 (G) <1 (-) 18 (-) >0.05
rs9271327 chr6:32582533 HLA-DQA1 [-13423bp] C - 4 C vs. G 0.283 (C) 0.367 (C) >1 (-) 8 (-) >0.05
rs28746990 chr6:32653903 HLA-DQB1 [+17743bp] C - 6 A vs. G 0.133 (G) 0.242 (G) <1 (-) 22 (-) >0.05
rs28746954 chr6:32652826 HLA-DQB1 [+16666bp] C - 6 A vs. C 0.125 (C) 0.275 (C) <1 (-) 29 (-) >0.05
rs28747022 chr6:32654785 HLA-DQB1 [+18625bp] C - 6 A vs. G 0.167 (A) 0.308 (A) >1 (-) 24 (-) >0.05
rs9271289 chr6:32581305 HLA-DQA1 [-14651bp] C - 4 T vs. C 0.283 (T) 0.4 (T) >1 (-) 7 (-) >0.05
rs9271333 chr6:32582678 HLA-DQA1 [-13278bp] C - 4 T vs. C 0.15 (T) 0.375 (T) >1 (-) 0 (-) >0.05
rs28746996 chr6:32654214 HLA-DQB1 [+18054bp] C - 6 T vs. C 0.158 (C) 0.308 (C) <1 (-) 23 (-) >0.05
rs28746997 chr6:32654225 HLA-DQB1 [+18065bp] C - 6 T vs. C 0.158 (T) 0.292 (T) >1 (-) 24 (-) >0.05
rs9271334 chr6:32582711 HLA-DQA1 [-13245bp] C - 4 A vs. C 0.15 (C) 0.392 (C) <1 (-) 0 (-) >0.05
rs28746918 chr6:32649769 HLA-DQB1 [+13609bp] C - 4 A vs. T 0.142 (T) 0.333 (T) <1 (-) 63 (-) >0.05
rs28746977 chr6:32653558 HLA-DQB1 [+17398bp] C - 6 T vs. C 0.183 (T) 0.217 (T) >1 (-) 18 (-) >0.05
rs28746976 chr6:32653536 HLA-DQB1 [+17376bp] C - 6 A vs. C 0.183 (A) 0.242 (A) >1 (-) 18 (-) >0.05
rs7756647 chr6:32582843 HLA-DQA1 [-13113bp] C - 4 A vs. G 0.15 (G) 0.383 (G) <1 (-) 0 (-) >0.05
rs9271302 chr6:32581621 HLA-DQA1 [-14335bp] C - 4 T vs. C 0.275 (C) 0.383 (C) <1 (-) 7 (-) >0.05
rs9271299 chr6:32581537 HLA-DQA1 [-14419bp] C - 4 C vs. G 0.283 (C) 0.383 (C) >1 (-) 6 (-) >0.05
rs641685 chr6:32582003 HLA-DQA1 [-13953bp] C - 4 A vs. G 0.283 (A) 0.408 (A) >1 (-) 6 (-) >0.05
rs521512 chr6:32581982 HLA-DQA1 [-13974bp] C - 4 T vs. C 0.283 (C) 0.408 (C) <1 (-) 6 (-) >0.05
rs28746966 chr6:32653145 HLA-DQB1 [+16985bp] C - 6 A vs. C 0.167 (C) 0.317 (C) <1 (-) 22 (-) >0.05
rs28747031 chr6:32655125 HLA-DQB1 [+18965bp] C - 6 A vs. T 0.183 (A) 0.317 (A) >1 (-) 24 (-) >0.05
rs9271324 chr6:32582482 HLA-DQA1 [-13474bp] C - 4 C vs. G 0.283 (G) 0.408 (G) <1 (-) 8 (-) >0.05
rs17206042 chr6:32652244 HLA-DQB1 [+16084bp] C - 6 A vs. G 0.167 (A) 0.3 (A) >1 (-) 36 (-) >0.05
rs28746914 chr6:32649536 HLA-DQB1 [+13376bp] C - 4 T vs. C 0.183 (C) 0.367 (C) <1 (-) 62 (-) >0.05
rs28746915 chr6:32649543 HLA-DQB1 [+13383bp] C - 4 A vs. G 0.183 (A) 0.35 (A) >1 (-) 62 (-) >0.05
rs9271377 chr6:32587165 HLA-DQA1 [-8791bp] C - 3 T vs. G 0.275 (G) 0.233 (G) >1 (-) 3 (-) >0.05
rs28746955 chr6:32652858 HLA-DQB1 [+16698bp] C - 6 A vs. C 0.175 (C) 0.283 (C) <1 (-) 26 (-) >0.05
rs17212441 chr6:32652494 HLA-DQB1 [+16334bp] C - 5 T vs. C - - <1 (-) 45 (-) >0.05
rs28371253 chr6:32654257 HLA-DQB1 [+18097bp] C - 10 T vs. C 0.075 (T) 0.183 (T) <1 (-) 0 (-) >0.05
rs28746964 chr6:32653083 HLA-DQB1 [+16923bp] C - 6 C vs. G 0.167 (G) 0.308 (G) <1 (-) 22 (-) >0.05
rs28746913 chr6:32649517 HLA-DQB1 [+13357bp] C - 4 A vs. G 0.192 (A) 0.367 (A) >1 (-) 62 (-) >0.05
rs28746982 chr6:32653703 HLA-DQB1 [+17543bp] C - 6 A vs. G 0.167 (A) 0.217 (A) >1 (-) 20 (-) >0.05
rs28746963 chr6:32653079 HLA-DQB1 [+16919bp] C - 6 T vs. C - - >1 (-) 22 (-) >0.05
rs28746943 chr6:32652634 HLA-DQB1 [+16474bp] C - 6 A vs. T 0.125 (A) 0.242 (A) >1 (-) 32 (-) >0.05
rs28746908 chr6:32648963 HLA-DQB1 [+12803bp] C - 4 A vs. C - - >1 (-) 63 (-) >0.05
rs28746909 chr6:32648975 HLA-DQB1 [+12815bp] C - 4 A vs. G - - >1 (-) 63 (-) >0.05
rs2856680 chr6:32655606 HLA-DQB1 [+19446bp] C - 10 C vs. G 0.067 (G) 0.192 (G) >1 (-) 0 (-) >0.05
rs28747003 chr6:32654322 HLA-DQB1 [+18162bp] C - 6 T vs. C 0.158 (C) 0.283 (C) <1 (-) 23 (-) >0.05
rs28746968 chr6:32653247 HLA-DQB1 [+17087bp] C - 6 T vs. C 0.158 (T) 0.292 (T) >1 (-) 21 (-) >0.05
rs28746948 chr6:32652763 HLA-DQB1 [+16603bp] C - 6 A vs. G - - <1 (-) 27 (-) >0.05

Association studies for this region [+]