HLA-DQA1, chr6:32595956-32614839 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs532965 chr6:32577973 HLA-DQA1 [-17983bp] All: C 105,041 14 G vs. T 0.233 (G) 0.167 (G) 0.81 (0.77-0.86) 35 (0-66) 3.16e-12
Meta_image?name=rs532965

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2647002 chr6:32657082 HLA-DQB1 [+20922bp] C - 10 A vs. G 0.075 (G) 0.167 (G) >1 (-) 0 (-) >0.05
rs9271613 chr6:32591666 HLA-DQA1 [-4290bp] C - 11 T vs. C 0.108 (T) 0.108 (T) >1 (-) 0 (-) >0.05
rs9271633 chr6:32592072 HLA-DQA1 [-3884bp] C - 11 T vs. G 0.117 (G) 0.1 (G) <1 (-) 0 (-) >0.05
rs9271626 chr6:32591944 HLA-DQA1 [-4012bp] C - 11 A vs. C 0.108 (A) 0.117 (A) >1 (-) 0 (-) >0.05
rs9271627 chr6:32591949 HLA-DQA1 [-4007bp] C - 11 T vs. C 0.108 (T) 0.108 (T) >1 (-) 0 (-) >0.05
rs28746904 chr6:32648773 HLA-DQB1 [+12613bp] C - 4 T vs. C 0.158 (C) 0.325 (C) <1 (-) 62 (-) >0.05
rs28747012 chr6:32654558 HLA-DQB1 [+18398bp] C - 6 T vs. C - - <1 (-) 24 (-) >0.05
rs28746927 chr6:32650029 HLA-DQB1 [+13869bp] C - 4 T vs. C - - >1 (-) 63 (-) >0.05
rs28746926 chr6:32650026 HLA-DQB1 [+13866bp] C - 4 C vs. G - - >1 (-) 63 (-) >0.05
rs28383241 chr6:32584319 HLA-DQA1 [-11637bp] C - 4 A vs. C 0.442 (C) - <1 (-) 0 (-) >0.05
rs28746903 chr6:32648768 HLA-DQB1 [+12608bp] C - 4 T vs. C 0.158 (T) 0.325 (T) >1 (-) 62 (-) >0.05
rs17212329 chr6:32652005 HLA-DQB1 [+15845bp] C - 6 T vs. C 0.183 (T) 0.342 (T) >1 (-) 46 (-) >0.05
rs9270806 chr6:32569563 HLA-DRB1 [+11938bp] C - 3 T vs. C - - >1 (-) 0 (-) >0.05
rs3135003 chr6:32591476 HLA-DQA1 [-4480bp] C - 11 T vs. C 0.117 (T) 0.092 (T) >1 (-) 0 (-) >0.05
rs9271524 chr6:32589820 HLA-DQA1 [-6136bp] C - 11 A vs. C 0.117 (C) 0.1 (C) <1 (-) 0 (-) >0.05
rs28371258 chr6:32658513 HLA-DQB1 [+22353bp] C - 10 T vs. C 0.075 (C) 0.183 (C) >1 (-) 0 (-) >0.05
rs2647007 chr6:32664677 HLA-DQB1 [+28517bp] C - 12 T vs. G 0.075 (G) 0.175 (G) >1 (-) 0 (-) >0.05
rs9271528 chr6:32589923 HLA-DQA1 [-6033bp] C - 11 T vs. C 0.117 (T) 0.092 (T) >1 (-) 0 (-) >0.05
rs17205788 chr6:32651056 HLA-DQB1 [+14896bp] C - 4 A vs. C - 0.2 (A) >1 (-) 63 (-) >0.05
rs28371257 chr6:32658375 HLA-DQB1 [+22215bp] C - 10 T vs. G 0.075 (G) 0.208 (G) >1 (-) 0 (-) >0.05
rs28747060 chr6:32656614 HLA-DQB1 [+20454bp] C - 9 T vs. C 0.117 (T) - >1 (-) 17 (-) >0.05
rs201785404 chr6:32655996 HLA-DQB1 [+19836bp] C - 3 T vs. C - - <1 (-) 0 (-) >0.05
rs9272242 chr6:32602790 HLA-DQA1 C - 5 T vs. C 0.4 (C) 0.45 (C) <1 (-) 54 (-) >0.05
rs2647009 chr6:32661615 HLA-DQB1 [+25455bp] C - 11 A vs. T 0.067 (A) 0.175 (A) <1 (-) 0 (-) >0.05
rs2647008 chr6:32661515 HLA-DQB1 [+25355bp] C - 11 A vs. C 0.075 (C) 0.175 (C) >1 (-) 0 (-) >0.05
rs28746932 chr6:32650217 HLA-DQB1 [+14057bp] C - 5 A vs. T 0.192 (A) 0.325 (A) >1 (-) 55 (-) >0.05
rs28746931 chr6:32650194 HLA-DQB1 [+14034bp] C - 5 A vs. G 0.192 (G) 0.333 (G) <1 (-) 55 (-) >0.05
rs62404084 chr6:32603321 HLA-DQA1 C - 5 T vs. C 0.242 (T) 0.158 (T) <1 (-) 65 (-) >0.05
rs17206005 chr6:32652069 HLA-DQB1 [+15909bp] C - 6 A vs. G 0.183 (G) 0.342 (G) <1 (-) 46 (-) >0.05
rs3129763 chr6:32590925 HLA-DQA1 [-5031bp] C - 11 A vs. G 0.117 (A) 0.1 (A) >1 (-) 0 (-) >0.05
rs9273499 chr6:32628306 HLA-DQB1 C - 3 T vs. G - - <1 (-) 64 (-) >0.05
rs17212336 chr6:32652026 HLA-DQB1 [+15866bp] C - 6 A vs. C 0.183 (A) 0.342 (A) >1 (-) 45 (-) >0.05
rs17205998 chr6:32652050 HLA-DQB1 [+15890bp] C - 6 A vs. G 0.175 (G) 0.342 (G) <1 (-) 46 (-) >0.05
rs9271541 chr6:32590070 HLA-DQA1 [-5886bp] C - 11 A vs. C 0.117 (C) 0.1 (C) <1 (-) 0 (-) >0.05
rs17212265 chr6:32651694 HLA-DQB1 [+15534bp] C - 5 T vs. C 0.175 (T) 0.283 (T) >1 (-) 57 (-) >0.05
rs28746934 chr6:32650436 HLA-DQB1 [+14276bp] C - 5 T vs. C 0.158 (C) 0.308 (C) <1 (-) 55 (-) >0.05
rs28747047 chr6:32655578 HLA-DQB1 [+19418bp] C - 6 T vs. C 0.158 (T) 0.308 (T) >1 (-) 25 (-) >0.05
rs28747048 chr6:32655584 HLA-DQB1 [+19424bp] C - 6 T vs. C 0.167 (T) 0.3 (T) >1 (-) 25 (-) >0.05
rs9273497 chr6:32628297 HLA-DQB1 C - 3 T vs. C - - >1 (-) 64 (-) >0.05
rs17206012 chr6:32652077 HLA-DQB1 [+15917bp] C - 6 A vs. C 0.175 (C) 0.333 (C) <1 (-) 46 (-) >0.05
rs9272062 chr6:32599265 HLA-DQA1 C - 3 A vs. G - - <1 (-) 0 (-) >0.05
rs28864514 chr6:32569431 HLA-DRB1 [+11806bp] C - 4 A vs. G - - >1 (-) 0 (-) >0.05
rs17205914 chr6:32651680 HLA-DQB1 [+15520bp] C - 6 A vs. G 0.158 (G) 0.317 (G) <1 (-) 47 (-) >0.05
rs115777056 chr6:32664154 HLA-DQB1 [+27994bp] C - 11 A vs. C - 0.142 (A) >1 (-) 0 (-) >0.05
rs9272150 chr6:32601000 HLA-DQA1 C - 3 A vs. T 0.308 (A) 0.35 (A) >1 (-) 44 (-) >0.05
rs7755224 chr6:32652317 HLA-DQB1 [+16157bp] C - 5 A vs. T 0.158 (T) 0.3 (T) <1 (-) 46 (-) >0.05
rs28747063 chr6:32656668 HLA-DQB1 [+20508bp] C - 9 T vs. C - - <1 (-) 16 (-) >0.05
rs74756176 chr6:32664373 HLA-DQB1 [+28213bp] C - 11 T vs. G - 0.133 (T) >1 (-) 0 (-) >0.05
rs17205795 chr6:32651066 HLA-DQB1 [+14906bp] C - 4 T vs. C 0.183 (T) 0.242 (T) >1 (-) 63 (-) >0.05
rs28747061 chr6:32656653 HLA-DQB1 [+20493bp] C - 9 T vs. C - - >1 (-) 16 (-) >0.05

Association studies for this region [+]