HLA-DQA1, chr6:32595956-32614839 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs532965 chr6:32577973 HLA-DQA1 [-17983bp] All: C 105,041 14 G vs. T 0.233 (G) 0.167 (G) 0.81 (0.77-0.86) 35 (0-66) 3.16e-12
Meta_image?name=rs532965

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs17205907 chr6:32651649 HLA-DQB1 [+15489bp] C - 6 A vs. G 0.167 (G) 0.325 (G) <1 (-) 48 (-) >0.05
rs9271417 chr6:32587818 HLA-DQA1 [-8138bp] C - 4 T vs. C 0.125 (C) 0.217 (C) >1 (-) 0 (-) >0.05
rs17840121 chr6:32577693 HLA-DQA1 [-18263bp] C - 8 C vs. G 0.133 (C) 0.033 (C) <1 (-) 0 (-) >0.05
rs28747066 chr6:32656817 HLA-DQB1 [+20657bp] C - 9 A vs. G 0.075 (A) - >1 (-) 15 (-) >0.05
rs13206219 chr6:32577847 HLA-DQA1 [-18109bp] C - 8 T vs. G 0.117 (T) - <1 (-) 0 (-) >0.05
rs9271424 chr6:32587922 HLA-DQA1 [-8034bp] C - 4 T vs. C 0.125 (C) 0.208 (C) >1 (-) 0 (-) >0.05
rs3104364 chr6:32603968 HLA-DQA1 C - 3 A vs. G 0.458 (A) 0.425 (A) >1 (-) 17 (-) >0.05
rs2856674 chr6:32659645 HLA-DQB1 [+23485bp] C - 6 A vs. G 0.1 (G) 0.033 (G) <1 (-) 0 (-) >0.05
rs2647004 chr6:32659609 HLA-DQB1 [+23449bp] C - 6 T vs. C 0.1 (C) - <1 (-) 0 (-) >0.05
rs2647092 chr6:32584440 HLA-DQA1 [-11516bp] C - 4 T vs. C 0.117 (T) 0.242 (T) >1 (-) 0 (-) >0.05
rs13206639 chr6:32578100 HLA-DQA1 [-17856bp] C - 8 A vs. G 0.125 (A) 0.033 (A) <1 (-) 0 (-) >0.05
rs28483633 chr6:32624874 HLA-DQB1 [-2370bp] C - 3 A vs. C - 0.067 (A) >1 (-) 0 (-) >0.05
rs562462 chr6:32586437 HLA-DQA1 [-9519bp] C - 4 T vs. C - - <1 (-) 0 (-) >0.05
rs17212279 chr6:32651713 HLA-DQB1 [+15553bp] C - 6 A vs. G 0.175 (G) 0.292 (G) <1 (-) 48 (-) >0.05
rs9271425 chr6:32587923 HLA-DQA1 [-8033bp] C - 4 A vs. G 0.125 (G) 0.208 (G) >1 (-) 0 (-) >0.05
rs9271437 chr6:32588166 HLA-DQA1 [-7790bp] C - 4 A vs. G 0.133 (A) 0.217 (A) <1 (-) 0 (-) >0.05
rs28629976 chr6:32625221 HLA-DQB1 [-2023bp] C - 3 T vs. C 0.025 (C) 0.283 (C) <1 (-) 0 (-) >0.05
rs17211818 chr6:32636963 HLA-DQB1 [+803bp] C - 3 A vs. C 0.092 (A) 0.1 (A) >1 (-) 35 (-) >0.05
rs2856696 chr6:32651868 HLA-DQB1 [+15708bp] C - 6 A vs. T 0.075 (T) - >1 (-) 0 (-) >0.05
rs28371262 chr6:32658733 HLA-DQB1 [+22573bp] C - 4 T vs. C 0.075 (T) - <1 (-) 0 (-) >0.05
rs9272207 chr6:32601966 HLA-DQA1 C - 3 T vs. C 0.258 (C) - <1 (-) 48 (-) >0.05
rs2647063 chr6:32570439 HLA-DRB1 [+12814bp] C - 3 C vs. G 0.108 (C) - <1 (-) 0 (-) >0.05
rs9271439 chr6:32588234 HLA-DQA1 [-7722bp] C - 4 A vs. G 0.133 (G) - >1 (-) 0 (-) >0.05
rs28479136 chr6:32625051 HLA-DQB1 [-2193bp] C - 3 A vs. G - 0.45 (G) >1 (-) 0 (-) >0.05
rs3021175 chr6:32651404 HLA-DQB1 [+15244bp] C - 6 T vs. C 0.075 (C) 0.167 (C) >1 (-) 0 (-) >0.05
rs28772271 chr6:32656901 HLA-DQB1 [+20741bp] C - 9 T vs. C - - <1 (-) 16 (-) >0.05
rs9272105 chr6:32599999 HLA-DQA1 C - 4 A vs. G 0.408 (A) 0.475 (A) >1 (-) 0 (-) >0.05
rs9271300 chr6:32581582 HLA-DQA1 [-14374bp] C - 4 C vs. G 0.433 (G) 0.383 (G) >1 (-) 0 (-) >0.05
rs9272104 chr6:32599918 HLA-DQA1 C - 4 T vs. C 0.408 (C) 0.475 (C) <1 (-) 0 (-) >0.05
rs17212223 chr6:32651540 HLA-DQB1 [+15380bp] C - 4 T vs. C 0.142 (T) 0.083 (T) >1 (-) 64 (-) >0.05
rs9271471 chr6:32588665 HLA-DQA1 [-7291bp] C - 4 C vs. G 0.133 (G) 0.225 (G) >1 (-) 0 (-) >0.05
rs9271462 chr6:32588501 HLA-DQA1 [-7455bp] C - 4 T vs. C 0.133 (C) - >1 (-) 0 (-) >0.05
rs28747037 chr6:32655336 HLA-DQB1 [+19176bp] C - 9 T vs. C 0.042 (C) 0.217 (C) <1 (-) 3 (-) >0.05
rs9271460 chr6:32588463 HLA-DQA1 [-7493bp] C - 4 A vs. G 0.108 (A) - <1 (-) 0 (-) >0.05
rs28747065 chr6:32656806 HLA-DQB1 [+20646bp] C - 9 T vs. C 0.058 (C) - <1 (-) 16 (-) >0.05
rs17205782 chr6:32651051 HLA-DQB1 [+14891bp] C - 5 T vs. C 0.133 (T) 0.242 (T) >1 (-) 54 (-) >0.05
rs17205775 chr6:32651047 HLA-DQB1 [+14887bp] C - 5 A vs. G 0.133 (G) 0.283 (G) <1 (-) 54 (-) >0.05
rs28746937 chr6:32651401 HLA-DQB1 [+15241bp] C - 7 T vs. C 0.183 (T) 0.292 (T) >1 (-) 40 (-) >0.05
rs9271484 chr6:32588905 HLA-DQA1 [-7051bp] C - 4 T vs. G 0.142 (T) 0.183 (T) <1 (-) 0 (-) >0.05
rs28747056 chr6:32656544 HLA-DQB1 [+20384bp] C - 9 A vs. G 0.108 (G) 0.25 (G) <1 (-) 15 (-) >0.05
rs28746936 chr6:32651393 HLA-DQB1 [+15233bp] C - 7 A vs. G 0.175 (A) 0.308 (A) >1 (-) 40 (-) >0.05
rs9271492 chr6:32589122 HLA-DQA1 [-6834bp] C - 4 A vs. C 0.217 (C) 0.342 (C) >1 (-) 0 (-) >0.05
rs28747055 chr6:32656476 HLA-DQB1 [+20316bp] C - 9 A vs. G 0.117 (A) 0.317 (A) >1 (-) 15 (-) >0.05
rs9272179 chr6:32601451 HLA-DQA1 C - 3 T vs. C 0.317 (C) 0.45 (C) <1 (-) 31 (-) >0.05
rs9272180 chr6:32601461 HLA-DQA1 C - 3 T vs. C 0.325 (T) 0.45 (T) >1 (-) 31 (-) >0.05
rs9272186 chr6:32601635 HLA-DQA1 C - 3 T vs. C 0.333 (T) 0.433 (T) >1 (-) 36 (-) >0.05
rs116630455 chr6:32601946 HLA-DQA1 C - 4 T vs. C 0.158 (C) 0.2 (C) >1 (-) 72 (-) >0.05
rs28383272 chr6:32586207 HLA-DQA1 [-9749bp] C - 3 A vs. T 0.125 (A) - >1 (-) 0 (-) >0.05
rs28383273 chr6:32586221 HLA-DQA1 [-9735bp] C - 3 T vs. C 0.125 (T) - >1 (-) 0 (-) >0.05
rs28383274 chr6:32586246 HLA-DQA1 [-9710bp] C - 3 A vs. G 0.125 (G) 0.033 (G) <1 (-) 0 (-) >0.05

Association studies for this region [+]